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Noncoding RNA transcription targets AID to divergently transcribed loci in B cells
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Qiao Wang et al.
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Silvia Carvalho et al.
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Masatoshi Aida et al.
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Arito Yamane et al.
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Atsushi Tanaka et al.
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Lili Wang et al.
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Munehisa Yabuki et al.
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Man Liu et al.
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Nagarama Kothapalli et al.
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Man Liu et al.
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John W. Edmunds et al.
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Diana Ronai et al.
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Mani Larijani et al.
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Targeting of somatic hypermutation
Valerie H. Odegard et al.
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Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription
E Vojnic et al.
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M Li et al.
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KO Kizer et al.
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J Chaudhuri et al.
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