4.7 Article

Design, synthesis, and computational studies of benzimidazole derivatives as new antitubercular agents

期刊

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
卷 41, 期 7, 页码 2667-2686

出版社

TAYLOR & FRANCIS INC
DOI: 10.1080/07391102.2022.2036241

关键词

Benzimidazole; DprE1; molecular docking; molecular dynamics simulations; ADME

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The increase in drug-resistant strains of Mycobacterium tuberculosis has driven researchers to seek new drug targets. In this study, the antitubercular activity of benzimidazole derivatives was experimentally determined, and molecular docking studies revealed their interaction with the DprE1 enzyme.
The increase in the drug-resistant strains of Mycobacterium tuberculosis has led researchers to new drug targets. The development of new compounds that have effective inhibitory properties with the selective vital structure of Mycobacterium tuberculosis is required in new scientific approaches. The most important of these approaches is the development of inhibitor molecules for Mycobacterium cell wall targets. In this study, first of all, the antitubercular activity of 23 benzimidazole derivatives was experimentally determined. And then molecular docking studies were carried out with 4 different targets: Arabinosyltransferase C (EmbC), Filamentous Temperature Sensitive Mutant Z (FtsZ), Protein Tyrosine Phosphatase B (PtpB), and Decaprenylphosphoryl-beta-D-ribose-2 '-oxidase (DprE1). It has been determined that benzimidazole derivatives show activity through the DprE1 enzyme. It is known that DprE1, which has an important role in the synthesis of the cell envelope from Arabinogalactan, is also effective in the formation of drug resistance. Due to this feature, the DprE1 enzyme has become an important target for drug development studies. Also, it was chosen as a target for this study. This study aims to identify molecules that inhibit DprE1 for the development of more potent and selective antitubercular drugs. For this purpose, molecular docking studies by AutoDock Vina, and CDOCKER and molecular dynamics (MD) simulations and in silico ADME/Tox analysis were implemented for 23 molecules. The molecules exhibited binding affinity values of less than -8.0 kcal/mol. After determining the compound's anti-TB activities by a screening test, the best-docked results were detected using compounds 20, 21, and 30. It was found that 21, was the best molecule with its binding affinity value, which was supported by MD simulations and in silico ADME modeling results. Communicated by Ramaswamy H. Sarma.

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