Agromyces agglutinans sp. nov., isolated from saline lake sediment

A novel actinobacterium, designated strain CFH 90414(T), was isolated from sediment sampled at a saline lake in Yuncheng, Shanxi, PR China. The taxonomic position of the strain was investigated by using a polyphasic approach. Cells of strain CFH 90414(T) were Gram-reaction-positive, aerobic and non-motile. Growth occured at 4-40 degrees C, pH 5.0-9.0 and in the presence of up to 0-3.0 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CFH 90414(T) was a member of the genus Agromyces. The 16S rRNA gene sequence similarity analysis indicated that strain CFH 90414(T) was most closely related to Agromyces italicus JCM 14320(T) (98.07 %) and Agromyces lapidis JCM 14321(T) (97.18%). The whole genome of CFH 90414(T) was 3.64 Mb, and showed a G+C content of 71.5 mol%. The average nucleotide identity (ANI) values and digital DNA-DNA hybridization (dDDH) values between CFH 90414(T) and the other species of the genus Agromyces were found to be low (ANI <78.99% and dDDH <22.9 %). The whole-cell sugars were rhamnose, mannose, ribose, glucose and galactose. The isolate contained l-2,4-diaminobutyric acid, d-alanine, d-glutamic acid and glycine in the cell-wall peptidoglycan. The predominant menaquinone was MK-12. The major cellular fatty acids were anteiso-C-15:0, anteiso-C-17:0 and iso-C-16:0. The polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol and an unidentified glycolipid. On the basis of phenotypic, genotypic and phylogenetic data, strain CFH 90414(T) is considered to represent a novel species of the genus Agromyces, for which the name Agromyces agglutinans sp. nov. is proposed. The type strain is CFH 90414(T) (=DSM 105966(T)=KCTC 49062(T)).

Automated summary

A novel actinobacterium, strain CFH 90414(T), was isolated from sediment sampled at a saline lake in Yuncheng, Shanxi, PR China. Through a polyphasic approach, the taxonomic position of the strain was determined and it was identified as a new species in the genus Agromyces.