An Efficient Protein Evolution Workflow for the Improvement of Bacterial PET Hydrolyzing Enzymes

Enzymatic degradation is a promising green approach to bioremediation and recycling of the polymer poly(ethylene terephthalate) (PET). In the past few years, several PET-hydrolysing enzymes (PHEs) have been discovered, and new variants have been evolved by protein engineering. Here, we report on a straightforward workflow employing semi-rational protein engineering combined to a high-throughput screening of variant libraries for their activity on PET nanoparticles. Using this approach, starting from the double variant W159H/S238F of Ideonella sakaiensis 201-F6 PETase, the W159H/F238A-Delta IsPET variant, possessing a higher hydrolytic activity on PET, was identified. This variant was stabilized by introducing two additional known substitutions (S121E and D186H) generating the TS-Delta IsPET variant. By using 0.1 mg mL(-1) of TS-Delta IsPET, ~10.6 mM of degradation products were produced in 2 days from 9 mg mL(-1) PET microparticles (~26% depolymerization yield). Indeed, TS-Delta IsPET allowed a massive degradation of PET nanoparticles (>80% depolymerization yield) in 1.5 h using only 20 mu g of enzyme mL(-1). The rationale underlying the effect on the catalytic parameters due to the F238A substitution was studied by enzymatic investigation and molecular dynamics/docking analysis. The present workflow is a well-suited protocol for the evolution of PHEs to help generate an efficient enzymatic toolbox for polyester degradation.

Automated summary

This study reports a straightforward workflow for the evolution of PET-hydrolysing enzymes (PHEs) using semi-rational protein engineering and high-throughput screening. By screening variant libraries on PET nanoparticles, a variant with higher hydrolytic activity was identified and further stabilized. This workflow provides a suitable protocol for the generation of efficient enzymatic tools for polyester degradation.