4.7 Article

A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization

Bobbie Pelham-Webb et al.

Summary: This study elucidates the principles and mediators of molecular resetting in mouse pluripotent stem cells during self-renewal, including the asynchronous transcriptional and architectural resetting upon mitotic exit, and the potential bookmarking function of H3K27 acetylation.

MOLECULAR CELL (2021)

Article Genetics & Heredity

Orphan CpG islands amplify poised enhancer regulatory activity and determine target gene responsiveness

Tomas Pachano et al.

Summary: Research found that isolated CGIs are crucial for enhancing the long-range regulatory activity of poised enhancers and the interaction with distantly located genes, especially for genes with large CGI clusters in their promoters.

NATURE GENETICS (2021)

Article Multidisciplinary Sciences

High throughput screening identifies SOX2 as a super pioneer factor that inhibits DNA methylation maintenance at its binding sites

Ludovica Vanzan et al.

Summary: The authors investigate the effect of DNA methylation on Pioneer Transcription Factor (PF) binding and distinguish between PFs that protect their binding sites from methylation and those that bind to methylated DNA and induce DNA demethylation.

NATURE COMMUNICATIONS (2021)

Article Biochemical Research Methods

4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis

Peter H. L. Krijger et al.

METHODS (2020)

Review Biochemistry & Molecular Biology

Genomic Imprinting and Physiological Processes in Mammals

Valter Tucci et al.

Article Multidisciplinary Sciences

A bipartite boundary element restricts UBE3A imprinting to mature neurons

Jack S. Hsiao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Review Reproductive Biology

DNA methylation dynamics of genomic imprinting in mouse development

Jennifer M. SanMiguel et al.

BIOLOGY OF REPRODUCTION (2018)

Review Biochemistry & Molecular Biology

Alteration of Epigenetic Regulation by Long Noncoding RNAs in Cancer

Mariangela Morlando et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Biology

The discovery and importance of genomic imprinting

Anne C. Ferguson-Smith et al.

Article Biochemistry & Molecular Biology

A permissive chromatin state regulated by ZFP281-AFF3 in controlling the imprinted Meg3 polycistron

Yan Wang et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Orphan CpG islands define a novel class of highly active enhancers

Joshua S. K. Bell et al.

EPIGENETICS (2017)

Article Biochemistry & Molecular Biology

Acetylation Enhances TET2 Function in Protecting against Abnormal DNA Methylation during Oxidative Stress

Yang W. Zhang et al.

MOLECULAR CELL (2017)

Article Genetics & Heredity

Frequent hypermethylation of orphan CpG islands with enhancer activity in cancer

Min Gyun Bae et al.

BMC MEDICAL GENOMICS (2016)

Article Cell & Tissue Engineering

CRISPR Interference Efficiently Induces Specific and Reversible Gene Silencing in Human iPSCs

Mohammad A. Mandegar et al.

CELL STEM CELL (2016)

Article Cell Biology

Regulation of the imprinted Dlk1-Dio3 locus by allele-specific enhancer activity

Zhuojuan Luo et al.

GENES & DEVELOPMENT (2016)

Article Biotechnology & Applied Microbiology

Targeted DNA demethylation in vivo using dCas9-peptide repeat and scFv-TET1 catalytic domain fusions

Sumiyo Morita et al.

NATURE BIOTECHNOLOGY (2016)

Article Biochemistry & Molecular Biology

Repurposing the CRISPR-Cas9 system for targeted DNA methylation

Aleksandar Vojta et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Biochemistry & Molecular Biology

Long noncoding RNAs in DNA methylation: new players stepping into the old game

Yu Zhao et al.

CELL AND BIOSCIENCE (2016)

Article Cell Biology

Parent-of-Origin DNA Methylation Dynamics during Mouse Development

Yonatan Stelzer et al.

CELL REPORTS (2016)

Article Biochemical Research Methods

4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments

Ramya Raviram et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Cell Biology

A CRISPR-based approach for targeted DNA demethylation

Xingxing Xu et al.

CELL DISCOVERY (2016)

Article Biotechnology & Applied Microbiology

Inducible in vivo genome editing with CRISPR-Cas9

Lukas E. Dow et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

Identification of active transcriptional regulatory elements from GRO-seq data

Charles G. Danko et al.

NATURE METHODS (2015)

Article Biotechnology & Applied Microbiology

Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression

Ruslan Strogantsev et al.

GENOME BIOLOGY (2015)

Article Biochemistry & Molecular Biology

CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities

Manuel Sanchez-Castillo et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Biochemistry & Molecular Biology

Understanding the relationship between DNA methylation and histone lysine methylation

Nathan R. Rose et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2014)

Review Biochemistry & Molecular Biology

Development and Applications of CRISPR-Cas9 for Genome Engineering

Patrick D. Hsu et al.

Review Developmental Biology

Genomic imprinting in development, growth, behavior and stem cells

Robert N. Plasschaert et al.

DEVELOPMENT (2014)

Article Cell Biology

Loss of Tet Enzymes Compromises Proper Differentiation of Embryonic Stem Cells

Meelad M. Dawlaty et al.

DEVELOPMENTAL CELL (2014)

Article Cell Biology

Nascent RNA interaction keeps PRC2 activity poised and in check

Syuzo Kaneko et al.

GENES & DEVELOPMENT (2014)

Article Developmental Biology

Epigenetics and imprinting in human disease

Jennifer M. Kalish et al.

INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Generation of mouse models of myeloid malignancy with combinatorial genetic lesions using CRISPR-Cas9 genome editing

Dirk Heck et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System

Baohui Chen et al.

Article Biochemistry & Molecular Biology

CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes

Luke A. Gilbert et al.

Article Biochemical Research Methods

Genome engineering using the CRISPR-Cas9 system

F. Ann Ran et al.

NATURE PROTOCOLS (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biochemical Research Methods

NIH Image to ImageJ: 25 years of image analysis

Caroline A. Schneider et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Mechanisms of activation of the paternally expressed genes by the Prader-Willi imprinting center in the Prader-Willi/Angelman syndromes domains

Shiri Rabinovitz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Establishment of paternal allele-specific DNA methylation at the imprinted mouse Gtl2 locus

Kamila Nowak et al.

EPIGENETICS (2011)

Article Biotechnology & Applied Microbiology

Methylation dynamics of IG-DMR and Gtl2-DMR during murine embryonic and placental development

Shun Sato et al.

GENOMICS (2011)

Article Multidisciplinary Sciences

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity

Kristine Williams et al.

NATURE (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Genetics & Heredity

Identification of genetic elements that autonomously determine DNA methylation states

Florian Lienert et al.

NATURE GENETICS (2011)

Article Cell Biology

Mammalian Genomic Imprinting

Marisa S. Bartolomei et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)

Article Hematology

An upstream insulator regulates DLK1 imprinting in AML

Haytham Khoury et al.

Article Biochemistry & Molecular Biology

Activation of the Imprinted Dlk1-Dio3 Region Correlates with Pluripotency Levels of Mouse Stem Cells

Lei Liu et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

Jing Zhao et al.

MOLECULAR CELL (2010)

Article Genetics & Heredity

Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome

Robert S. Illingworth et al.

PLOS GENETICS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Cell Biology

Genomic imprinting: employing and avoiding epigenetic processes

Marisa S. Bartolomei

GENES & DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

Developmental programming of CpG island methylation profiles in the human genome

Ravid Straussman et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)

Review Genetics & Heredity

Genomic imprinting at the mammalian Dlk1-Dio3 domain

Simao Teixeira da Rocha et al.

TRENDS IN GENETICS (2008)

Article Biochemistry & Molecular Biology

DNA methylation imprints on the IG-DMR of the Dlk1-Gtl2 domain in mouse male germline

Hitoshi Hiura et al.

FEBS LETTERS (2007)

Review Oncology

Loss of imprinting and cancer

P. Jelinic et al.

JOURNAL OF PATHOLOGY (2007)

Article Biochemistry & Molecular Biology

Rasgrf1 imprinting is regulated by a CTCF-dependent methylation-sensitive enhancer blocker

B Yoon et al.

MOLECULAR AND CELLULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Directed differentiation of embryonic stem cells into motor neurons

H Wichterle et al.