相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Method for Economic Evaluation of Bacterial Whole Genome Sequencing Surveillance Compared to Standard of Care in Detecting Hospital Outbreaks
Praveen Kumar et al.
CLINICAL INFECTIOUS DISEASES (2021)
Molecular surveillance of methicillin-resistant Staphylococcus aureus genomes in hospital unexpectedly reveals discordance between temporal and genetic clustering
Rebecca Rose et al.
AMERICAN JOURNAL OF INFECTION CONTROL (2021)
Outbreak of Pseudomonas aeruginosa Infections from a Contaminated Gastroscope Detected by Whole Genome Sequencing Surveillance
Alexander J. Sundermann et al.
CLINICAL INFECTIOUS DISEASES (2021)
Pilot study of a combined genomic and epidemiologic surveillance program for hospital-acquired multidrug-resistant pathogens across multiple hospital networks in Australia
Norelle L. Sherry et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2021)
Clinical perspectives in integrating whole-genome sequencing into the investigation of healthcare and public health outbreaks-hype or help?
B. J. Parcell et al.
JOURNAL OF HOSPITAL INFECTION (2021)
Budget impact analysis of routinely using whole-genomic sequencing of six multidrug-resistant bacterial pathogens in Queensland, Australia
Louisa G. Gordon et al.
BMJ OPEN (2021)
Whole Genome Sequencing Detects Minimal Clustering Among Escherichia coli Sequence Type 131-H30 Isolates Collected From United States Children's Hospitals
Arianna Miles-Jay et al.
JOURNAL OF THE PEDIATRIC INFECTIOUS DISEASES SOCIETY (2021)
Outbreak of Vancomycin-resistant Enterococcus faecium in Interventional Radiology: Detection Through Whole-genome Sequencing-based Surveillance
Alexander J. Sundermann et al.
CLINICAL INFECTIOUS DISEASES (2020)
Comparison of core-genome MLST, coreSNP and PFGE methods for Klebsiella pneumoniae cluster analysis
Floriana Gona et al.
MICROBIAL GENOMICS (2020)
PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks
Ana Berbel Caban et al.
GENOME MEDICINE (2020)
Two carbapenemase-producing Enterobacteriaceae outbreaks detected retrospectively by whole-genome sequencing at an Australian tertiary hospital
Alexandra Marmor et al.
INFECTION DISEASE & HEALTH (2020)
Automated data mining of the electronic health record for investigation of healthcare-associated outbreaks
Alexander J. Sundermann et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2019)
Statistical outbreak detection by joining medical records and pathogen similarity
James K. Miller et al.
JOURNAL OF BIOMEDICAL INFORMATICS (2019)
Use of whole-genome sequencing to guide a Clostridioides difficile diagnostic stewardship program
Kunal K. Jakharia et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2019)
Integration of genomic and clinical data augments surveillance of healthcare-acquired infections
Doyle V. Ward et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2019)
Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016
Norelle L. Sherry et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2019)
Whole-genome sequencing reveals nosocomial Clostridioides difficile transmission and a previously unsuspected epidemic scenario
Sergio Garcia-Fernandez et al.
SCIENTIFIC REPORTS (2019)
Evolution of Outbreak-Causing Carbapenem-Resistant Klebsiella pneumoniae ST258 at a Tertiary Care Hospital over 8 Years
Jane W. Marsh et al.
MBIO (2019)
Bronchoscope-associated clusters of multidrug-resistant Pseudomonas aeruginosa and carbapenem-resistant Klebsiella pneumoniae
Alison L. Galdys et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2019)
WGS to determine the extent of Clostridioides difficile transmission in a high incidence setting in North Wales in 2015
David W. Eyre et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2019)
Emergence of Vancomycin-Resistant&IT Enterococcus faecium&IT at an Australian Hospital: A Whole Genome Sequencing Analysis
Kelvin W. C. Leong et al.
SCIENTIFIC REPORTS (2018)
Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak
Jason C. Kwong et al.
PEERJ (2018)
Changing the paradigm for hospital outbreak detection by leading with genomic surveillance of nosocomial pathogens
Sharon J. Peacock et al.
MICROBIOLOGY-SGM (2018)
Transmission of Staphylococcus aureus between health-care workers, the environment, and patients in an intensive care unit: a longitudinal cohort study based on whole-genome sequencing
James R. Price et al.
LANCET INFECTIOUS DISEASES (2017)
Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing`
Kathy E. Raven et al.
CLINICAL INFECTIOUS DISEASES (2017)
Real-Time Genome Sequencing of Resistant Bacteria Provides Precision Infection Control in an Institutional Setting
Alexander Mellmann et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Keith A. Jolley et al.
BMC BIOINFORMATICS (2010)