4.6 Article

MetaGeneBank: a standardized database to study deep sequenced metagenomic data from human fecal specimen

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biotechnology & Applied Microbiology

Natural Products from Mammalian Gut Microbiota

Leli Wang et al.

TRENDS IN BIOTECHNOLOGY (2019)

Article Biochemistry & Molecular Biology

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

Alex L. Mitchell et al.

NUCLEIC ACIDS RESEARCH (2018)

Editorial Material Critical Care Medicine

The gut microbiota of critically ill patients: first steps in an unexplored world

Etienne Ruppe et al.

INTENSIVE CARE MEDICINE (2018)

Review Biochemistry & Molecular Biology

Current understanding of the human microbiome

Jack A. Gilbert et al.

NATURE MEDICINE (2018)

Article Multidisciplinary Sciences

Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes

Liping Zhao et al.

SCIENCE (2018)

Article Microbiology

Dynamics of metatranscription in the inflammatory bowel disease gut microbiome

Melanie Schirmer et al.

NATURE MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Strains, functions and dynamics in the expanded Human Microbiome Project

Jason Lloyd-Price et al.

NATURE (2017)

Article Biotechnology & Applied Microbiology

Towards standards for human fecal sample processing in metagenomic studies

Paul I. Costea et al.

NATURE BIOTECHNOLOGY (2017)

Article Cell Biology

A role for bacterial urease in gut dysbiosis and Crohn's disease

Josephine Ni et al.

SCIENCE TRANSLATIONAL MEDICINE (2017)

Article Multidisciplinary Sciences

The gut microbiome in atherosclerotic cardiovascular disease

Zhuye Jie et al.

NATURE COMMUNICATIONS (2017)

Article Biotechnology & Applied Microbiology

Quantitative metagenomics reveals unique gut microbiome biomarkers in ankylosing spondylitis

Chengping Wen et al.

GENOME BIOLOGY (2017)

Article Pharmacology & Pharmacy

Target Intestinal Microbiota to Alleviate Disease Progression in Amyotrophic Lateral Sclerosis

Yong-guo Zhang et al.

CLINICAL THERAPEUTICS (2017)

Article Biochemistry & Molecular Biology

EBI metagenomics in 2016-an expanding and evolving resource for the analysis and archiving of metagenomic data

Alex Mitchell et al.

NUCLEIC ACIDS RESEARCH (2016)

Editorial Material Biochemistry & Molecular Biology

Are We Really Vastly Outnumbered? Revisiting the Ratio of Bacterial to Host Cells in Humans

Ron Sender et al.

Review Multidisciplinary Sciences

Microbiome-wide association studies link dynamic microbial consortia to disease

Jack A. Gilbert et al.

NATURE (2016)

Editorial Material Biochemistry & Molecular Biology

Microbiome Data Science: Understanding Our Microbial Planet

Nikos C. Kyrpides et al.

TRENDS IN MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Comment: The FAIR Guiding Principles for scientific data management and stewardship

Mark D. Wilkinson et al.

SCIENTIFIC DATA (2016)

Article Immunology

Altered fecal microbiota composition in patients with major depressive disorder

Haiyin Jiang et al.

BRAIN BEHAVIOR AND IMMUNITY (2015)

Article Multidisciplinary Sciences

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

Kristoffer Forslund et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment

Xuan Zhang et al.

NATURE MEDICINE (2015)

Article Multidisciplinary Sciences

Gut microbiome development along the colorectal adenoma-carcinoma sequence

Qiang Feng et al.

NATURE COMMUNICATIONS (2015)

Article Microbiology

The Treatment-Naive Microbiome in New-Onset Crohn's Disease

Dirk Gevers et al.

CELL HOST & MICROBE (2014)

Article Multidisciplinary Sciences

Alterations of the human gut microbiome in liver cirrhosis

Nan Qin et al.

NATURE (2014)

Article Biotechnology & Applied Microbiology

An integrated catalog of reference genes in the human gut microbiome

Junhua Li et al.

NATURE BIOTECHNOLOGY (2014)

Article Biotechnology & Applied Microbiology

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

H. Bjorn Nielsen et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemistry & Molecular Biology

EBI metagenomics-a new resource for the analysis and archiving of metagenomic data

Sarah Hunter et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

Chengwei Luo et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Richness of human gut microbiome correlates with metabolic markers

Emmanuelle Le Chatelier et al.

NATURE (2013)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

A metagenome-wide association study of gut microbiota in type 2 diabetes

Junjie Qin et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

The Sequence Read Archive

Rasko Leinonen et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

A human gut microbial gene catalogue established by metagenomic sequencing

Junjie Qin et al.

NATURE (2010)

Article Biochemistry & Molecular Biology

Ab initio gene identification in metagenomic sequences

Wenhan Zhu et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

Daniel N. Frank et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

A comparison of five methods for extraction of bacterial DNA from human faecal samples

AL McOrist et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2002)