4.6 Article

MonaGO: a novel gene ontology enrichment analysis visualisation system

期刊

BMC BIOINFORMATICS
卷 23, 期 1, 页码 -

出版社

BMC
DOI: 10.1186/s12859-022-04594-1

关键词

Gene ontology; GO enrichment; Web services; Interactive visualisation; Semantic web

资金

  1. Australian Research Council Discovery Project [DP140100077, DP140101067]
  2. National Health and Medical Research Council/Heart Foundation Career Development Fellowship [1049980]
  3. Sun foundation
  4. China Scholarship Council
  5. State Government of Victoria
  6. Australian Government

向作者/读者索取更多资源

MonaGO is a web-based visualization system that allows biologists to perform GO enrichment analysis and visualize the results in an intuitive, interactive, and responsive manner. It supports various input formats and provides customizable display options.
Background Gene ontology (GO) enrichment analysis is frequently undertaken during exploration of various -omics data sets. Despite the wide array of tools available to biologists to perform this analysis, meaningful visualisation of the overrepresented GO in a manner which is easy to interpret is still lacking. Results Monash Gene Ontology (MonaGO) is a novel web-based visualisation system that provides an intuitive, interactive and responsive interface for performing GO enrichment analysis and visualising the results. MonaGO supports gene lists as well as GO terms as inputs. Visualisation results can be exported as high-resolution images or restored in new sessions, allowing reproducibility of the analysis. An extensive comparison between MonaGO and 11 state-of-the-art GO enrichment visualisation tools based on 9 features revealed that MonaGO is a unique platform that simultaneously allows interactive visualisation within one single output page, directly accessible through a web browser with customisable display options. Conclusion MonaGO combines dynamic clustering and interactive visualisation as well as customisation options to assist biologists in obtaining meaningful representation of overrepresented GO terms, producing simplified outputs in an unbiased manner. MonaGO will facilitate the interpretation of GO analysis and will assist the biologists into the representation of the results.

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