4.7 Article

SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data

Johannes Smolander et al.

Summary: This study evaluated the performance of six read-depth based CNV detection algorithms in ultra-low-coverage WGS data, finding that these methods perform well in detecting large CNVs but may produce false positives with smaller CNVs. BIC-seq2 was identified as the best method in statistical performance, while FREEC was considered the second-best method due to its faster runtime.

BMC GENOMICS (2021)

Article Multidisciplinary Sciences

The evolutionary history of 2,658 cancers

Moritz Gerstung et al.

NATURE (2020)

Article Biotechnology & Applied Microbiology

A community effort to create standards for evaluating tumor subclonal reconstruction

Adriana Salcedo et al.

NATURE BIOTECHNOLOGY (2020)

Review Biochemistry & Molecular Biology

Single-cell sequencing techniques from individual to multiomics analyses

Yukie Kashima et al.

EXPERIMENTAL AND MOLECULAR MEDICINE (2020)

Article Multidisciplinary Sciences

FastClone is a probabilistic tool for deconvoluting tumor heterogeneity in bulk-sequencing samples

Yao Xiao et al.

NATURE COMMUNICATIONS (2020)

Review Biotechnology & Applied Microbiology

Methods for copy number aberration detection from single-cell DNA-sequencing data

Xian F. Mallory et al.

GENOME BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Single-Cell RNA Sequencing in Cancer: Lessons Learned and Emerging Challenges

Mario L. Suva et al.

MOLECULAR CELL (2019)

Article Biochemical Research Methods

ACE: absolute copy number estimation from low-coverage whole-genome sequencing data

Jos B. Poell et al.

BIOINFORMATICS (2019)

Article Multidisciplinary Sciences

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

Anoop P. Patel et al.

SCIENCE (2014)

Article Biotechnology & Applied Microbiology

Copynumber: Efficient algorithms for single- and multi-track copy number segmentation

Gro Nilsen et al.

BMC GENOMICS (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Biochemical Research Methods

Genome-wide copy number analysis of single cells

Timour Baslan et al.

NATURE PROTOCOLS (2012)

Article Multidisciplinary Sciences

Fast Computation and Applications of Genome Mappability

Thomas Derrien et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Tumour evolution inferred by single-cell sequencing

Nicholas Navin et al.

NATURE (2011)

Article Multidisciplinary Sciences

The landscape of somatic copy-number alteration across human cancers

Rameen Beroukhim et al.

NATURE (2010)

Article Biochemical Research Methods

A faster circular binary segmentation algorithm for the analysis of array CGH data

E. S. Venkatraman et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

Integrating copy number polymorphisms into array CGH analysis using a robust HMM

Sohrab P. Shah et al.

BIOINFORMATICS (2006)

Article Mathematical & Computational Biology

Circular binary segmentation for the analysis of array-based DNA copy number data

AB Olshen et al.

BIOSTATISTICS (2004)