相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy
Bo Yuan et al.
CELL SYSTEMS (2021)
Personalized whole-body models integrate metabolism, physiology, and the gut microbiome
Ines Thiele et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
A Multi-Scale Approach to Modeling E. coli Chemotaxis
Eran Agmon et al.
ENTROPY (2020)
SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation
Derek N. Macklin et al.
SCIENCE (2020)
A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action
Jason H. Yang et al.
CELL (2019)
PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
Ahmadreza Ghaffarizadeh et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Tellurium: An extensible python-based modeling environment for systems and synthetic biology
Kiri Choi et al.
BIOSYSTEMS (2018)
Simbiotics: A Multiscale Integrative Platform for 3D Modeling of Bacterial Populations
Jonathan Naylor et al.
ACS SYNTHETIC BIOLOGY (2017)
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
Zachary A. King et al.
NUCLEIC ACIDS RESEARCH (2016)
libRoadRunner: a high performance SBML simulation and analysis library
Endre T. Somogyi et al.
BIOINFORMATICS (2015)
cellPACK: a virtual mesoscope to model and visualize structural systems biology
Graham T. Johnson et al.
NATURE METHODS (2015)
Mechanistic modeling confronts the complexity of molecular cell biology
Robert D. Phair
MOLECULAR BIOLOGY OF THE CELL (2014)
Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics
William R. Harcombe et al.
CELL REPORTS (2014)
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ali Ebrahim et al.
BMC SYSTEMS BIOLOGY (2013)
Integrative Structural Biology
Andrew B. Ward et al.
SCIENCE (2013)
A Whole-Cell Computational Model Predicts Phenotype from Genotype
Jonathan R. Karr et al.
CELL (2012)
Computational Modeling of Synthetic Microbial Biofilms
Timothy J. Rudge et al.
ACS SYNTHETIC BIOLOGY (2012)
Parallel distributed computing using Python
Lisandro D. Dalcin et al.
ADVANCES IN WATER RESOURCES (2011)
What is flux balance analysis?
Jeffrey D. Orth et al.
NATURE BIOTECHNOLOGY (2010)
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
Adam M. Feist et al.
METABOLIC ENGINEERING (2010)
A Cell-Based Model for Quorum Sensing in Heterogeneous Bacterial Colonies
Pontus Melke et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Detailed Simulations of Cell Biology with Smoldyn 2.1
Steven S. Andrews et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Quantitative approaches to the study of bistability in the lac operon of Escherichia coli
Moises Santillan et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2008)
Origin of bistability in the lac operon
M. Santillan et al.
BIOPHYSICAL JOURNAL (2007)
COPASI- A COmplex PAthway SImulator
Stefan Hoops et al.
BIOINFORMATICS (2006)
Taming heterogeneity the Ptolemy approach
J Eker et al.
PROCEEDINGS OF THE IEEE (2003)
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
JS Edwards et al.
NATURE BIOTECHNOLOGY (2001)
分享论文
