相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Microbe-Mineral Interaction and Novel Proteins for Iron Oxide Mineral Reduction in the Hyperthermophilic Crenarchaeon Pyrodictium delaneyi
Srishti Kashyap et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2021)
DOE JGI Metagenome Workflow
Alicia Clum et al.
MSYSTEMS (2021)
Seasonal hydrologic and geologic forcing drive hot spring geochemistry and microbial biodiversity
Daniel R. Colman et al.
ENVIRONMENTAL MICROBIOLOGY (2021)
Temperature and microbial interactions drive the deterministic assembly processes in sediments of hot springs
Qing He et al.
SCIENCE OF THE TOTAL ENVIRONMENT (2021)
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
Pierre-Alain Chaumeil et al.
BIOINFORMATICS (2020)
The Hot Spring Hypothesis for an Origin of Life
Bruce Damer et al.
ASTROBIOLOGY (2020)
A novel PARAFAC model for continental hot springs reveals unique dissolved organic carbon compositions
Joshua J. Nye et al.
ORGANIC GEOCHEMISTRY (2020)
Distinguishing Biotic and Abiotic Iron Oxidation at Low Temperatures
Brian St Clair et al.
ACS EARTH AND SPACE CHEMISTRY (2019)
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang et al.
PEERJ (2019)
The Intersection of Geology, Geochemistry, and Microbiology in Continental Hydrothermal Systems
Daniel R. Colman et al.
ASTROBIOLOGY (2019)
An evolving view of methane metabolism in the Archaea
Paul N. Evans et al.
NATURE REVIEWS MICROBIOLOGY (2019)
Electron acceptor availability alters carbon and energy metabolism in a thermoacidophile
Maximiliano J. Amenabar et al.
ENVIRONMENTAL MICROBIOLOGY (2018)
SWISS-MODEL: homology modelling of protein structures and complexes
Andrew Waterhouse et al.
NUCLEIC ACIDS RESEARCH (2018)
Reduction and Morphological Transformation of Synthetic Nanophase Iron Oxide Minerals by Hyperthermophilic Archaea
Srishti Kashyap et al.
FRONTIERS IN MICROBIOLOGY (2018)
Mechanisms of Mineral Substrate Acquisition in a Thermoacidophile
Maximiliano J. Amenabar et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
Yellowstone Hot Springs are Organic Chemodiversity Hot Spots
Michael Gonsior et al.
SCIENTIFIC REPORTS (2018)
MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis
Gherman V. Uritskiy et al.
MICROBIOME (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
High throughput in situ metagenomic measurement of bacterial replication at ultra-low sequencing coverage
Akintunde Emiola et al.
NATURE COMMUNICATIONS (2018)
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Robert M. Bowers et al.
NATURE BIOTECHNOLOGY (2017)
Earliest signs of life on land preserved in ca. 3.5 Ga hot spring deposits
Tara Djokic et al.
NATURE COMMUNICATIONS (2017)
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
Yu-Wei Wu et al.
BIOINFORMATICS (2016)
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
William Walters et al.
MSYSTEMS (2016)
Ecological differentiation in planktonic and sediment-associated chemotrophic microbial populations in Yellowstone hot springs
Daniel R. Colman et al.
FEMS MICROBIOLOGY ECOLOGY (2016)
Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park
Z. J. Jay et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
Stable isotope labeling confirms mixotrophic nature of streamer biofilm communities at alkaline hot springs
Florence Schubotz et al.
FRONTIERS IN MICROBIOLOGY (2015)
The rise of oxygen in Earth's early ocean and atmosphere
Timothy W. Lyons et al.
NATURE (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
Dynamics of the Yellowstone hydrothermal system
Shaul Hurwitz et al.
REVIEWS OF GEOPHYSICS (2014)
Greater temporal changes of sediment microbial community than its waterborne counterpart in Tengchong hot springs, Yunnan Province, China
Shang Wang et al.
SCIENTIFIC REPORTS (2014)
DNA replication origins in archaea
Zhenfang Wu et al.
FRONTIERS IN MICROBIOLOGY (2014)
Spatial and temporal variability of biomarkers and microbial diversity reveal metabolic and community flexibility in Streamer Biofilm Communities in the Lower Geyser Basin, Yellowstone National Park
F. Schubotz et al.
GEOBIOLOGY (2013)
Mixing of hydrothermal water and groundwater near hot springs, Yellowstone National Park (USA): hydrology and geochemistry
Matthew L. Gibson et al.
HYDROGEOLOGY JOURNAL (2013)
Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
Jessica K. Cole et al.
ISME JOURNAL (2013)
Role of 4-Hydroxybutyrate-CoA Synthetase in the CO2 Fixation Cycle in Thermoacidophilic Archaea
Aaron S. Hawkins et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
Phylogenetic prediction of the maximum per capita rate of population growth
William F. Fagan et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three Aquificales lineages
Cristina Takacs-Vesbach et al.
FRONTIERS IN MICROBIOLOGY (2013)
The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem
William P. Inskeep et al.
FRONTIERS IN MICROBIOLOGY (2013)
Temporal variations of geyser water chemistry in the Upper Geyser Basin, Yellowstone National Park, USA
Shaul Hurwitz et al.
GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS (2012)
Four chromosome replication origins in the archaeon Pyrobaculum calidifontis
Erik A. Pelve et al.
MOLECULAR MICROBIOLOGY (2012)
Modeling the habitat range of phototrophs in Yellowstone National Park: toward the development of a comprehensive fitness landscape
Eric S. Boyd et al.
FRONTIERS IN MICROBIOLOGY (2012)
Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean
Michael Huegler et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)
Ecological Aspects of the Distribution of Different Autotrophic CO2 Fixation Pathways
Ivan A. Berg
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
The cytochrome bd respiratory oxygen reductases
Vitaliy B. Borisov et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2011)
The transition to microbial photosynthesis in hot spring ecosystems
Alysia Cox et al.
CHEMICAL GEOLOGY (2011)
Hydrothermal ecotones and streamer biofilm communities in the Lower Geyser Basin, Yellowstone National Park
D'Arcy R. Meyer-Dombard et al.
ENVIRONMENTAL MICROBIOLOGY (2011)
A multitracer approach for characterizing interactions between shallow groundwater and the hydrothermal system in the Norris Geyser Basin area, Yellowstone National Park
W. Payton Gardner et al.
GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS (2011)
Merging isotopes and community genomics in a siliceous sinter-depositing hot spring
Jeff R. Havig et al.
JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
J. Gregory Caporaso et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA
Everett L. Shock et al.
GEOCHIMICA ET COSMOCHIMICA ACTA (2010)
Prediction of oxygen solubility in pure water and brines up to high temperatures and pressures
Ming Geng et al.
GEOCHIMICA ET COSMOCHIMICA ACTA (2010)
Autotrophic carbon fixation in archaea
Ivan A. Berg et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Sulfur geochemistry of hydrothermal waters in Yellowstone National Park: IV Acid-sulfate waters
D. Kirk Nordstrom et al.
APPLIED GEOCHEMISTRY (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Surface water-groundwater interaction and chemistry in a mineral-armored hydrothermal outflow channel, Yellowstone National Park, USA
M. V. Vitale et al.
HYDROGEOLOGY JOURNAL (2008)
KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
NUCLEIC ACIDS RESEARCH (2007)
Mutational bias suggests that replication termination occurs near the dif site, not at Ter sites
Heather Hendrickson et al.
MOLECULAR MICROBIOLOGY (2007)
Regulated Polyploidy in Halophilic Archaea
Sebastian Breuert et al.
PLOS ONE (2006)
The bacterial species definition in the genomic era
Konstantinos T. Konstantinidis et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA
D. R. Meyer-Dombard et al.
GEOBIOLOGY (2005)
Aeropyrum camini sp nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney
S Nakagawa et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Where does bacterial replication start? Rules for predicting the oriC region
P Mackiewicz et al.
NUCLEIC ACIDS RESEARCH (2004)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Automated quantitative and isotopic (C-13) analysis of dissolved inorganic carbon and dissolved organic carbon in continuous-flow using a total organic carbon analyser
G St-Jean
RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2003)
Chromosome replication patternsin the hyperthermophilic euryarchaea Archaeoglobus fulgidus and Methanocaldococcus (Methanococcus) jannaschii
S Maisnier-Patin et al.
MOLECULAR MICROBIOLOGY (2002)
Pyrobaculum oguniense sp nov., a novel facultatively aerobic and hyperthermophilic archaeon growing at up to 97 °C
Y Sako et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)
Exploring the phylogenetic structure of ecological communities: An example for rain forest trees
CO Webb
AMERICAN NATURALIST (2000)
Early evolution of cytochrome bc complexes
M Schütz et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
