相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Species diversity of fungal endophytes across a stress gradient for plants
Ryoko Oono et al.
NEW PHYTOLOGIST (2020)
Fungal communities living within leaves of native Hawaiian dicots are structured by landscape-scale variables as well as by host plants
John L. Darcy et al.
MOLECULAR ECOLOGY (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
Host identity and phylogeny shape the foliar endophytic fungal assemblages of Ficus
Junwei Liu et al.
ECOLOGY AND EVOLUTION (2019)
Host availability drives distributions of fungal endophytes in the imperilled boreal realm
Jana M. U'Ren et al.
NATURE ECOLOGY & EVOLUTION (2019)
A comparative analysis of Lophodermium fissuratum, sp nov., found in haploxylon pine needles in the Pacific Northwest, and other Lophodermium endophytes
Rodolfo Salas-Lizana et al.
MYCOLOGIA (2018)
Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units
Sydney I. Glassman et al.
MSPHERE (2018)
Two new endophytic Atractiellomycetes, Atractidochium hillariae and Proceropycnis hameedii
M. Catherine Aime et al.
MYCOLOGIA (2018)
Run-to-Run Sequencing Variation Can Introduce Taxon-Specific Bias in the Evaluation of Fungal Microbiomes
Zewei Song et al.
PHYTOBIOMES JOURNAL (2018)
Community structure of fern-affiliated endophytes in three neotropical forests
Mariana Del Olmo-Ruiz et al.
JOURNAL OF TROPICAL ECOLOGY (2017)
Distance decay relationships in foliar fungal endophytes are driven by rare taxa
Ryoko Oono et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
Benjamin J. Callahan et al.
ISME JOURNAL (2017)
Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes
Michelle A. Berry et al.
FRONTIERS IN MICROBIOLOGY (2017)
Lophodermium resinosum sp nov from red pine (Pinus resinosa) in Eastern Canada
Joey B. Tanney et al.
BOTANY (2017)
Historical and current climate drive spatial and temporal patterns in fungal endophyte diversity
Hannah Giauque et al.
FUNGAL ECOLOGY (2016)
Host associations and beta diversity of fungal endophyte communities in New Guinea rainforest trees
J. B. Vincent et al.
MOLECULAR ECOLOGY (2016)
Fungal identification biases in microbiome projects
Leho Tedersoo et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)
Error filtering, pair assembly and error correction for next-generation sequencing reads
Robert C. Edgar et al.
BIOINFORMATICS (2015)
A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda)
Ryoko Oono et al.
FUNGAL BIOLOGY (2015)
Changes in fungal community of Scots pine (Pinus sylvestris) needles along a latitudinal gradient in Sweden
Hanna Millberg et al.
FUNGAL ECOLOGY (2015)
Genetic isolation between two recently diverged populations of a symbiotic fungus
Sara Branco et al.
MOLECULAR ECOLOGY (2015)
Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales
Ko-Hsuan Chen et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)
Strategies for Achieving High Sequencing Accuracy for Low Diversity Samples and Avoiding Sample Bleeding Using Illumina Platform
Abhishek Mitra et al.
PLOS ONE (2015)
GENETIC VARIATION IN HORIZONTALLY TRANSMITTED FUNGAL ENDOPHYTES OF PINE NEEDLES REVEALS POPULATION STRUCTURE IN CRYPTIC SPECIES
Ryoko Oono et al.
AMERICAN JOURNAL OF BOTANY (2014)
AliView: a fast and lightweight alignment viewer and editor for large datasets
Anders Larsson
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Molecular identification and relative abundance of cryptic Lophodermium species in natural populations of Scots pine, Pinus sylvestris L.
Sabrina N. A. Reignoux et al.
FUNGAL BIOLOGY (2014)
Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns
Anjuli Meiser et al.
NEW PHYTOLOGIST (2014)
Fungal Endophytes of Aquatic Macrophytes: Diverse Host-Generalists Characterized by Tissue Preferences and Geographic Structure
Dustin C. Sandberg et al.
MICROBIAL ECOLOGY (2014)
Comparison of ITS1 and ITS2 rDNA in 454 sequencing of hyperdiverse fungal communities
Anna L. Bazzicalupo et al.
FUNGAL ECOLOGY (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Robert C. Edgar
NATURE METHODS (2013)
Host Genotype Shapes the Foliar Fungal Microbiome of Balsam Poplar (Populus balsamifera)
Miklos Balint et al.
PLOS ONE (2013)
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Johan Bengtsson-Palme et al.
METHODS IN ECOLOGY AND EVOLUTION (2013)
HOST AND GEOGRAPHIC STRUCTURE OF ENDOPHYTIC AND ENDOLICHENIC FUNGI AT A CONTINENTAL SCALE
Jana M. U'Ren et al.
AMERICAN JOURNAL OF BOTANY (2012)
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification
R. Henrik Nilsson et al.
Evolutionary Bioinformatics (2012)
Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes
R. Gazis et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
The Pleistocene glacial cycles shaped the historical demography and phylogeography of a pine fungal endophyte
Rodolfo Salas-Lizana et al.
MYCOLOGICAL PROGRESS (2012)
High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
Hirokazu Toju et al.
PLOS ONE (2012)
Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape
Naupaka B. Zimmerman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Colonization and lignin decomposition of pine needle litter by Lophodermium pinastri
T. Osono et al.
FOREST PATHOLOGY (2011)
Molecular phylogeny reveals a core clade of Rhytismatales
H. Lantz et al.
MYCOLOGIA (2011)
Culturing and direct PCR suggest prevalent host generalism among diverse fungal endophytes of tropical forest grasses
K. Lindsay Higgins et al.
MYCOLOGIA (2011)
Associations between species and groups of sites: indices and statistical inference
Miquel De Caceres et al.
ECOLOGY (2009)
Fungal endophytes: diversity and functional roles
R. J. Rodriguez et al.
NEW PHYTOLOGIST (2009)
A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?
A. Elizabeth Arnold et al.
SYSTEMATIC BIOLOGY (2009)
Biogeographic and phylogenetic patterns in diversity of liverwort-associated endophytes
E. Christine Davis et al.
AMERICAN JOURNAL OF BOTANY (2008)
Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees
Michele T. Hoffman et al.
MYCOLOGICAL RESEARCH (2008)
Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots?
A. Elizabeth Arnold et al.
ECOLOGY (2007)
MEGAN analysis of metagenomic data
Daniel H. Huson et al.
GENOME RESEARCH (2007)
Disproportionate abundance between ectomycorrhizal root tips and their associated mycelia
Rasmus Kjoller
FEMS MICROBIOLOGY ECOLOGY (2006)
Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts
KJ Martin et al.
BMC MICROBIOLOGY (2005)
Species of Rhytismataceae on needles of Juniperus spp. from China
CL Hou et al.
CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE (2005)
A community of unknown, endophytic fungi in western white pine
RJ Ganley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Glacial history and colonization of Europe by the blue tit Parus caeruleus
L Kvist et al.
JOURNAL OF AVIAN BIOLOGY (2004)
Evolutionary origins and ecological consequences of endophyte symbiosis with grasses
K Clay et al.
AMERICAN NATURALIST (2002)
Genetic relationships of endophytic Lophodermium nitens isolates from needles of Pinus strobus
RJ Deckert et al.
MYCOLOGICAL RESEARCH (2002)
Pine hybrids - a review of their use performance and genetics
HS Dungey
FOREST ECOLOGY AND MANAGEMENT (2001)
分享论文
