相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Human genetic admixture
Katharine L. Korunes et al.
PLOS GENETICS (2021)
A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis
Tomas Flouri et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
The Impact of Cross-Species Gene Flow on Species Tree Estimation
Xiyun Jiao et al.
SYSTEMATIC BIOLOGY (2020)
Methods for detecting introgressed archaic sequences
Sriram Sankararaman
CURRENT OPINION IN GENETICS & DEVELOPMENT (2020)
PRANC: ML species tree estimation from the ranked gene trees under coalescence
Anastasiia Kim et al.
BIOINFORMATICS (2020)
Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone
Alison Cloutier et al.
SYSTEMATIC BIOLOGY (2019)
An invariants-based method for efficient identification of hybrid species from large-scale genomic data
Laura S. Kubatko et al.
BMC EVOLUTIONARY BIOLOGY (2019)
Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons
Cheng-Min Shi et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Bayesian Inference of Species Networks from Multilocus Sequence Data
Chi Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data
Dingqiao Wen et al.
SYSTEMATIC BIOLOGY (2018)
Modeling Hybridization Under the Network Multispecies Coalescent
James H. Degnan
SYSTEMATIC BIOLOGY (2018)
The Effect of Gene Flow on Coalescent-based Species-Tree Inference
Colby Long et al.
SYSTEMATIC BIOLOGY (2018)
HyDe: A Python Package for Genome-Scale Hybridization Detection
Paul D. Blischak et al.
SYSTEMATIC BIOLOGY (2018)
Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent
Tomas Flouri et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex
Yuttapong Thawornwattana et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent
Graham Jones
JOURNAL OF MATHEMATICAL BIOLOGY (2017)
Exact Calculation of the Joint Allele Frequency Spectrum for Isolation with Migration Models
Andrew D. Kern et al.
GENETICS (2017)
Inference of Gene Flow in the Process of Speciation: An Efficient Maximum-Likelihood Method for the Isolation-with-Initial-Migration Model
Rui J. Costa et al.
GENETICS (2017)
PhyloNetworks: A Package for Phylogenetic Networks
Claudia Solis-Lemus et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates
Huw A. Ogilvie et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Tracing the peopling of the world through genomics
Rasmus Nielsen et al.
NATURE (2017)
Population-genomic inference of the strength and timing of selection against gene flow
Simon Aeschbacher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Efficient Bayesian Species Tree Inference under the Multispecies Coalescent
Bruce Rannala et al.
SYSTEMATIC BIOLOGY (2017)
Exact Calculation of the Joint Allele Frequency Spectrum for Isolation with Migration Models
Andrew D. Kern et al.
GENETICS (2017)
Inference of Gene Flow in the Process of Speciation: An Efficient Maximum-Likelihood Method for the Isolation-with-Initial-Migration Model
Rui J. Costa et al.
GENETICS (2017)
Interpreting the genomic landscape of introgression
Simon H. Martin et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2017)
How reticulated are species?
James Mallet et al.
BIOESSAYS (2016)
In the light of deep coalescence: revisiting trees within networks
Jiafan Zhu et al.
BMC BIOINFORMATICS (2016)
Challenges in Species Tree Estimation Under the Multispecies Coalescent Model
Bo Xu et al.
GENETICS (2016)
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
Erfan Sayyari et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Inconsistency of Species Tree Methods under Gene Flow
Claudia Solis-Lemus et al.
SYSTEMATIC BIOLOGY (2016)
Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae).
Charles W. Linkem et al.
SYSTEMATIC BIOLOGY (2016)
Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
Claudia Solis-Lemus et al.
PLOS GENETICS (2016)
Challenges in Species Tree Estimation Under the Multispecies Coalescent Model
Bo Xu et al.
GENETICS (2016)
Estimating phylogenetic trees from genome-scale data
Liang Liu et al.
YEAR IN EVOLUTIONARY BIOLOGY (2015)
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
Siavash Mirarab et al.
BIOINFORMATICS (2015)
Detection and Polarization of Introgression in a Five-Taxon Phylogeny
James B. Pease et al.
SYSTEMATIC BIOLOGY (2015)
Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
Sebastien Roch et al.
THEORETICAL POPULATION BIOLOGY (2015)
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable
Fabio Pardi et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Extensive introgression in a malaria vector species complex revealed by phylogenomics
Michael C. Fontaine et al.
SCIENCE (2015)
Quartet Inference from SNP Data Under the Coalescent Model
Julia Chifman et al.
BIOINFORMATICS (2014)
Efficient computation in the IM model
Lars Norvang Andersen et al.
JOURNAL OF MATHEMATICAL BIOLOGY (2014)
Unguided Species Delimitation Using DNA Sequence Data from Multiple Loci
Ziheng Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Maximum likelihood inference of reticulate evolutionary histories
Yun Yu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Robustness to Divergence Time Underestimation When Inferring Species Trees from Estimated Gene Trees
Michael DeGiorgio et al.
SYSTEMATIC BIOLOGY (2014)
The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
Adam D. Leache et al.
SYSTEMATIC BIOLOGY (2014)
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
Simon H. Martin et al.
GENOME RESEARCH (2013)
COALESCENT-BASED SPECIES TREE INFERENCE FROM GENE TREE TOPOLOGIES UNDER INCOMPLETE LINEAGE SORTING BY MAXIMUM LIKELIHOOD
Yufeng Wu
EVOLUTION (2012)
Ancient Admixture in Human History
Nick Patterson et al.
GENETICS (2012)
Maximum Likelihood Implementation of an Isolation-with-Migration Model with Three Species for Testing Speciation with Gene Flow
Tianqi Zhu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection
Yun Yu et al.
PLOS GENETICS (2012)
Testing for Ancient Admixture between Closely Related Populations
Eric Y. Durand et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Bayesian inference of ancient human demography from individual genome sequences
Ilan Gronau et al.
NATURE GENETICS (2011)
The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods
Adam D. Leache et al.
SYSTEMATIC BIOLOGY (2011)
Estimating Species Trees from Unrooted Gene Trees
Liang Liu et al.
SYSTEMATIC BIOLOGY (2011)
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
Liang Liu et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Estimating Divergence Parameters With Small Samples From a Large Number of Loci
Yong Wang et al.
GENETICS (2010)
Maximum tree: a consistent estimator of the species tree
Liang Liu et al.
JOURNAL OF MATHEMATICAL BIOLOGY (2010)
Isolation with Migration Models for More Than Two Populations
Jody Hey
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Bayesian Inference of Species Trees from Multilocus Data
Joseph Heled et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Bayesian species delimitation using multilocus sequence data
Ziheng Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
Scott V. Edwards
EVOLUTION (2009)
What Is the Danger of the Anomaly Zone for Empirical Phylogenetics?
Huateng Huang et al.
SYSTEMATIC BIOLOGY (2009)
Identifying Hybridization Events in the Presence of Coalescence via Model Selection
Laura Salter Kubatko
SYSTEMATIC BIOLOGY (2009)
Phylogenetic Analysis in the Anomaly Zone
Liang Liu et al.
SYSTEMATIC BIOLOGY (2009)
Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
Chen Meng et al.
THEORETICAL POPULATION BIOLOGY (2009)
Gene tree discordance, phylogenetic inference and the multispecies coalescent
James H. Degnan et al.
TRENDS IN ECOLOGY & EVOLUTION (2009)
Estimation of hominoid ancestral population sizes under Bayesian coalescent models incorporating mutation rate variation and sequencing errors
Ralph Burgess et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Subdivision in an ancestral species creates asymmetry in gene trees
Montgomery Slatkin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
A genomic view of introgression and hybrid speciation
Eric J. Baack et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
Jody Hey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Species trees from gene trees: Reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
Liang Liu et al.
SYSTEMATIC BIOLOGY (2007)
Discordance of species trees with their most likely gene trees
James H. Degnan et al.
PLOS GENETICS (2006)
Phylogenetics of modern birds in the era of genomics
SV Edwards et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2005)
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D-persimilis
J Hey et al.
GENETICS (2004)
MrBayes 3: Bayesian phylogenetic inference under mixed models
F Ronquist et al.
BIOINFORMATICS (2003)
Gene trees and species trees are not the same
R Nichols
TRENDS IN ECOLOGY & EVOLUTION (2001)
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
P Beerli et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Dealing with label switching in mixture models
M Stephens
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2000)
分享论文
