相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa
Jorge A. Moura de Sousa et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Shufang Wu et al.
GIGASCIENCE (2021)
Learning transferable deep convolutional neural networks for the classification of bacterial virulence factors
Dandan Zheng et al.
BIOINFORMATICS (2020)
Classifying the Lifestyle of Metagenomically-Derived Phages Sequences Using Alignment-Free Methods
Kai Song
FRONTIERS IN MICROBIOLOGY (2020)
Identifying viruses from metagenomic data using deep learning
Jie Ren et al.
QUANTITATIVE BIOLOGY (2020)
Phage therapy as a potential solution in the fight against AMR: obstacles and possible futures
Charlotte Brives et al.
PALGRAVE COMMUNICATIONS (2020)
virMine: automated detection of viral sequences from complex metagenomic samples
Andrea Garretto et al.
PEERJ (2019)
PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning
Zhencheng Fang et al.
GIGASCIENCE (2019)
Gut Bacteriophage: Current Understanding and Challenges
Thomas D. S. Sutton et al.
FRONTIERS IN ENDOCRINOLOGY (2019)
Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease
Adam G. Clooney et al.
CELL HOST & MICROBE (2019)
Phage Therapy: Going Temperate?
Rodrigo Monteiro et al.
TRENDS IN MICROBIOLOGY (2019)
The gut virome: the 'missing link' between gut bacteria and host immunity?
Indrani Mukhopadhy et al.
THERAPEUTIC ADVANCES IN GASTROENTEROLOGY (2019)
Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus
Wojciech Galan et al.
SCIENTIFIC REPORTS (2019)
MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins
Deyvid Amgarten et al.
FRONTIERS IN GENETICS (2018)
Alignment-free d2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
Nathan A. Ahlgren et al.
NUCLEIC ACIDS RESEARCH (2017)
Communication between viruses guides lysis-lysogeny decisions
Zohar Erez et al.
NATURE (2017)
Menage a trois in the human gut: interactions between host, bacteria and phages
Mohammadali Khan Mirzaei et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches
Stephen Hayes et al.
VIRUSES-BASEL (2017)
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
Jie Ren et al.
MICROBIOME (2017)
Bacteriophage evolution differs by host, lifestyle and genome
Travis N. Mavrich et al.
NATURE MICROBIOLOGY (2017)
WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs
Clovis Galiez et al.
BIOINFORMATICS (2017)
HostPhinder: A Phage Host Prediction Tool
Julia Villarroel et al.
VIRUSES-BASEL (2016)
Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
Jason M. Norman et al.
CELL (2015)
The human gut microbiota and virome: Potential therapeutic implications
Emidio Scarpellini et al.
DIGESTIVE AND LIVER DISEASE (2015)
VirSorter: mining viral signal from microbial genomic data
Simon Roux et al.
PEERJ (2015)
Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton
Helen F. Schmidt et al.
ISME JOURNAL (2014)
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
H. Bjorn Nielsen et al.
NATURE BIOTECHNOLOGY (2014)
Metagenomics of rumen bacteriophage from thirteen lactating dairy cattle
Elizabeth M. Ross et al.
BMC MICROBIOLOGY (2013)
Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly
Joanne B. Emerson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
PHACTS, a computational approach to classifying the lifestyle of phages
Katelyn McNair et al.
BIOINFORMATICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Metagenomics and future perspectives in virus discovery
John L. Mokili et al.
CURRENT OPINION IN VIROLOGY (2012)
Predicting Plasmid Promiscuity Based on Genomic Signature
Haruo Suzuki et al.
JOURNAL OF BACTERIOLOGY (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
FragGeneScan: predicting genes in short and error-prone reads
Mina Rho et al.
NUCLEIC ACIDS RESEARCH (2010)
The use of genomic signature distance between bacteriophages and their hosts displays evolutionary relationships and phage growth cycle determination
Patrick Deschavanne et al.
VIROLOGY JOURNAL (2010)
Host-parasite relations of bacteria and phages can be unveiled by Oligostickiness, a measure of relaxed sequence similarity
Shamim Ahmed et al.
BIOINFORMATICS (2009)
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
F. Meyer et al.
BMC BIOINFORMATICS (2008)
NCBIBLAST: a better web interface
Mark Johnson et al.
NUCLEIC ACIDS RESEARCH (2008)
MetaSim-A Sequencing Simulator for Genomics and Metagenomics
Daniel C. Richter et al.
PLOS ONE (2008)
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
KD Pruitt et al.
NUCLEIC ACIDS RESEARCH (2005)
Complete genomic sequence of bacteriophage u136: Demonstration of phage heterogeneity within the P335 quasi-species of lactococcal phages
S Labrie et al.
VIROLOGY (2002)
Virioplankton: Viruses in aquatic ecosystems
KE Wommack et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
分享论文
