4.5 Article

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

No Accumulation of Transposable Elements in Asexual Arthropods

Jens Bast et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemical Research Methods

ReproPhylo: An Environment for Reproducible Phylogenomics

Amir Szitenberg et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Mating system shifts and transposable element evolution in the plant genus Capsella

J. Arvid Agren et al.

BMC GENOMICS (2014)

Article Evolutionary Biology

Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi

Jaqueline Hess et al.

GENOME BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

The Relation between Recombination Rate and Patterns of Molecular Evolution and Variation in Drosophila melanogaster

Jose L. Campos et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Genetics & Heredity

One code to find them all: a perl tool to conveniently parse RepeatMasker output files

Marc Bailly-Bechet et al.

MOBILE DNA (2014)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

Architecture and evolution of a minute plant genome

Enrique Ibarra-Laclette et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Christian Quast et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Alu elements in primates are preferentially lost from areas of high GC content

Elizabeth H. B. Hellen et al.

Review Genetics & Heredity

Transposable Elements: An Abundant and Natural Source of Regulatory Sequences for Host Genes

Rita Rebollo et al.

ANNUAL REVIEW OF GENETICS, VOL 46 (2012)

Article Biochemical Research Methods

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

Elmar Pruesse et al.

BIOINFORMATICS (2012)

Article Evolutionary Biology

Molecular Evolution in Nonrecombining Regions of the Drosophila melanogaster Genome

Jose L. Campos et al.

GENOME BIOLOGY AND EVOLUTION (2012)

Article Multidisciplinary Sciences

Function, Targets, and Evolution of Caenorhabditis elegans piRNAs

Marloes P. Bagijn et al.

SCIENCE (2012)

Article Genetics & Heredity

How does selfing affect the dynamics of selfish transposable elements?

Thibaud S. Boutin et al.

MOBILE DNA (2012)

Review Biology

The struggle for life of the genome's selfish architects

Aurelie Hua-Van et al.

BIOLOGY DIRECT (2011)

Article Genetics & Heredity

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

A. P. Jason de Koning et al.

PLOS GENETICS (2011)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Biochemical Research Methods

ETE: a python Environment for Tree Exploration

Jaime Huerta-Cepas et al.

BMC BIOINFORMATICS (2010)

Review Genetics & Heredity

Alternative splicing and evolution: diversification, exon definition and function

Hadas Keren et al.

NATURE REVIEWS GENETICS (2010)

Article Biochemical Research Methods

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutierrez et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

Nicolas Lartillot et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

R. Keith Slotkin et al.

Review Evolutionary Biology

Transposable Elements and Factors Influencing their Success in Eukaryotes

Ellen J. Pritham

JOURNAL OF HEREDITY (2009)

Review Genetics & Heredity

The impact of retrotransposons on human genome evolution

Richard Cordaux et al.

NATURE REVIEWS GENETICS (2009)

Review Biology

The evolution of RNAi as a defence against viruses and transposable elements

Darren J. Obbard et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)

Article Multidisciplinary Sciences

The B73 Maize Genome: Complexity, Diversity, and Dynamics

Patrick S. Schnable et al.

SCIENCE (2009)

Article Biochemical Research Methods

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

David Ellinghaus et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Endogenous RNA interference provides a somatic Defense against Drosophila transposons

Wei-Jen Chung et al.

CURRENT BIOLOGY (2008)

Review Cell Biology

Population epigenetics

Eric J. Richards

CURRENT OPINION IN GENETICS & DEVELOPMENT (2008)

Article Biochemistry & Molecular Biology

Chromodomains direct integration of retrotransposons to heterochromatin

Xiang Gao et al.

GENOME RESEARCH (2008)

Review Plant Sciences

Genomic consequences of outcrossing and selfing in plants

Stephen I. Wright et al.

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2008)

Article Biochemistry & Molecular Biology

Retrotransposon Tf1 is targeted to pol II promoters by transcription activators

Young-Eun Leem et al.

MOLECULAR CELL (2008)

Article Multidisciplinary Sciences

Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells

Yoshinori Kawamura et al.

NATURE (2008)

Article Multidisciplinary Sciences

An endogenous small interfering RNA pathway in Drosophila

Benjamin Czech et al.

NATURE (2008)

Article Multidisciplinary Sciences

Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells

Megha Ghildiyal et al.

SCIENCE (2008)

Article Evolutionary Biology

Phylogenetic Signal, Evolutionary Process, and Rate

Liam J. Revell et al.

SYSTEMATIC BIOLOGY (2008)

Article Multidisciplinary Sciences

Long-term evolution of transposable elements

Arnaud Le Rouzic et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Review Multidisciplinary Sciences

The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race

Alexei A. Aravin et al.

SCIENCE (2007)

Article Multidisciplinary Sciences

The frailty of adaptive hypotheses for the origins of organismal complexity

Michael Lynch

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biotechnology & Applied Microbiology

Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity

D. J. Hedges et al.

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2007)

Review Biochemistry & Molecular Biology

An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa

Birgit H. M. Meldal et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades

Martijn Holterman et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Biochemistry & Molecular Biology

The human LINE-1 retrotransposon creates DNA double-strand breaks

SL Gasior et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemical Research Methods

De novo identification of repeat families in large genomes

AL Price et al.

BIOINFORMATICS (2005)

Article Parasitology

Effective sizes of macroparasite populations: a conceptual model

CD Criscione et al.

TRENDS IN PARASITOLOGY (2005)

Article Biochemical Research Methods

Automated generation of heuristics for biological sequence comparison

GS Slater et al.

BMC BIOINFORMATICS (2005)

Article Cell Biology

Repbase update, a database of eukaryotic repetitive elements

J Jurka et al.

CYTOGENETIC AND GENOME RESEARCH (2005)

Review Plant Sciences

Genome size variation and evolution in Veronica

DC Albach et al.

ANNALS OF BOTANY (2004)

Article Biochemistry & Molecular Biology

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

N Lartillot et al.

MOLECULAR BIOLOGY AND EVOLUTION (2004)

Article Genetics & Heredity

Natural genetic variation caused by transposable elements in humans

EA Bennettt et al.

GENETICS (2004)

Article Multidisciplinary Sciences

The origins of genome complexity

M Lynch et al.

SCIENCE (2003)

Article Multidisciplinary Sciences

Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi

T Sijen et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

Size matters: Non-LTR retrotransposable elements and ectopic recombination in Drosophila

DA Petrov et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Article Biochemistry & Molecular Biology

Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements

DN Lerman et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Article Biochemistry & Molecular Biology

Automated de novo identification of repeat sequence families in sequenced genomes

ZR Bao et al.

GENOME RESEARCH (2002)

Letter Biochemistry & Molecular Biology

Selection on Alu sequences?

JFY Brookfield

CURRENT BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Genome evolution: Sex and the transposable element

S Wright et al.

CURRENT BIOLOGY (2001)

Article Biochemistry & Molecular Biology

Studies on the relationships between the synonymous codon usage and protein secondary structural units

SK Gupta et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2000)