相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation
Aria Dolatabadian et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)
Wilson Kimani et al.
BMC GENOMICS (2020)
Evaluation of genetic diversity, agronomic traits, and anthracnose resistance in the NPGS Sudan Sorghum Core collection
Hugo E. Cuevas et al.
BMC GENOMICS (2020)
Impact of sorghum racial structure and diversity on genomic prediction of grain yield components
Felix T. Sattler et al.
CROP SCIENCE (2020)
Transcriptome Analysis of Drought-Resistant and Drought-Sensitive Sorghum (Sorghum bicolor) Genotypes in Response to PEG-Induced Drought Stress
Salah E. Abdel-Ghany et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)
Trait associations in the pangenome of pigeon pea (Cajanus cajan)
Junliang Zhao et al.
PLANT BIOTECHNOLOGY JOURNAL (2020)
A sorghum practical haplotype graph facilitates genome-wide imputation and cost-effective genomic prediction
Sarah E. Jensen et al.
PLANT GENOME (2020)
Fine-Mapping of Sorghum Stay-Green QTL on Chromosome10 Revealed Genes Associated with Delayed Senescence
K. N. S. Usha Kiranmayee et al.
GENES (2020)
Plant pan-genomes are the new reference
Philipp E. Bayer et al.
NATURE PLANTS (2020)
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
Elizabeth A. Cooper et al.
BMC GENOMICS (2019)
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Lei Gao et al.
NATURE GENETICS (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum (Sorghum bicolor)
Ravi Valluru et al.
GENETICS (2019)
Gene duplication and genetic innovation in cereal genomes
Hui Guo et al.
GENOME RESEARCH (2019)
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
Nelle Varoquaux et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
Ryan F. McCormick et al.
PLANT JOURNAL (2018)
Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus
Bhavna Hurgobin et al.
PLANT BIOTECHNOLOGY JOURNAL (2018)
Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Wensheng Wang et al.
NATURE (2018)
Pathways and Network Based Analysis of Candidate Genes to Reveal Cross-Talk and Specificity in the Sorghum (Sorghum bicolor (L.) Moench) Responses to Drought and It's Co-occurring Stresses
Adugna Abdi Woldesemayat et al.
FRONTIERS IN GENETICS (2018)
Evaluation of Genetic Variation among Sorghum Varieties from Southwest China via Genome Resequencing
Songxian Yan et al.
PLANT GENOME (2018)
Assembly and comparison of two closely related Brassica napus genomes
Philipp E. Bayer et al.
PLANT BIOTECHNOLOGY JOURNAL (2017)
The pangenome of hexaploid bread wheat
Juan D. Montenegro et al.
PLANT JOURNAL (2017)
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
Sean P. Gordon et al.
NATURE COMMUNICATIONS (2017)
Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
Bruno Contreras-Moreira et al.
FRONTIERS IN PLANT SCIENCE (2017)
Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes
Peng Zhou et al.
BMC GENOMICS (2017)
Towards plant pangenomics
Agnieszka A. Golicz et al.
PLANT BIOTECHNOLOGY JOURNAL (2016)
Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE
Alessandra Fracasso et al.
BMC PLANT BIOLOGY (2016)
Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
Kenji Yano et al.
NATURE GENETICS (2016)
The pangenome of an agronomically important crop plant Brassica oleracea
Agnieszka A. Golicz et al.
NATURE COMMUNICATIONS (2016)
SorghumFDB: sorghum functional genomics database with multidimensional network analysis
Tian Tian et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Genome-environment associations in sorghum landraces predict adaptive traits
Jesse R. Lasky et al.
SCIENCE ADVANCES (2015)
Exploring the rice dispensable genome using a metagenome-like assembly strategy
Wen Yao et al.
GENOME BIOLOGY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Beyond genomic variation - comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage
Ke Lin et al.
BMC GENOMICS (2014)
Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress
Stephanie M. Johnson et al.
BMC GENOMICS (2014)
Structural variations in plant genomes
Rachit K. Saxena et al.
BRIEFINGS IN FUNCTIONAL GENOMICS (2014)
Presence-Absence Variation in A-thaliana Is Primarily Associated with Genomic Signatures Consistent with Relaxed Selective Constraints
Stephen J. Bush et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism
Wei Chen et al.
NATURE GENETICS (2014)
Insights into the Maize Pan-Genome and Pan-Transcriptome
Candice N. Hirsch et al.
PLANT CELL (2014)
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa , document novel gene space of aus and indica
Michael C Schatz et al.
GENOME BIOLOGY (2014)
High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array
Wubishet A. Bekele et al.
PLANT BIOTECHNOLOGY JOURNAL (2013)
Extensive Variation in the Density and Distribution of DNA Polymorphism in Sorghum Genomes
Joseph Evans et al.
PLOS ONE (2013)
Population genomic and genome-wide association studies of agroclimatic traits in sorghum
Geoffrey P. Morris et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
GAPIT: genome association and prediction integrated tool
Alexander E. Lipka et al.
BIOINFORMATICS (2012)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)
Lei-Ying Zheng et al.
GENOME BIOLOGY (2011)
Genetic Support for Phenotype-based Racial Classification in Sorghum
Patrick J. Brown et al.
CROP SCIENCE (2011)
Genetic diversity in Chinese sorghum landraces revealed by chloroplast simple sequence repeats
Ruyu Li et al.
GENETIC RESOURCES AND CROP EVOLUTION (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Inferring weak population structure with the assistance of sample group information
Melissa J. Hubisz et al.
MOLECULAR ECOLOGY RESOURCES (2009)
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson et al.
NATURE (2009)
An assessment of the genetic relationship between sweet and grain sorghums, within Sorghum bicolor ssp bicolor (L.) Moench, using AFLP markers
Kimberley B. Ritter et al.
EUPHYTICA (2007)
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
Adrian Alexa et al.
BIOINFORMATICS (2006)
Genome evolution in the genus Sorghum (Poaceae)
HJ Price et al.
ANNALS OF BOTANY (2005)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Genetic mapping of Sorghum bicolor (L.) Moench QTLs that control variation in tillering and other morphological characters
GE Hart et al.
THEORETICAL AND APPLIED GENETICS (2001)
Characteristics, linkage-map positions, and allelic differentiation of Sorghum bicolor (L.) Moench DNA simple-sequence repeats (SSRs)
L Kong et al.
THEORETICAL AND APPLIED GENETICS (2000)
分享论文
