4.6 Article

Jumping Jack : Genomic Microsatellites Underscore the Distinctiveness of Closely Related Pseudoperonospora cubensis and Pseudoperonospora humuli and Provide New Insights Into Their Evolutionary Past

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Plant Sciences

Microsatellite Markers from Peronospora tabacina, the Cause of Blue Mold of Tobacco, Reveal Species Origin, Population Structure, and High Gene Flow

Marcin Nowicki et al.

Summary: The study on Peronospora tabacina revealed genetic variations, high gene flow, and a positive correlation between geographic and genetic distance among subpopulations. High genetic variation and population structure were attributed to continuous gene flow across continents via infected transplant exchange and/or long-distance dispersal of sporangia via wind currents.

PHYTOPATHOLOGY (2022)

Article Agronomy

Pseudoperonospora humuli might be an introduced species in Central Europe with low genetic diversity but high distribution potential

Miloslav Kitner et al.

Summary: The study found low genetic variation and predominant selfing in the European Pseudoperonospora humuli populations, with frequent long-distance exchanges, suggesting a large potentially panmictic population. It is recommended to use a wide array of P. humuli strains in resistance breeding programs.

EUROPEAN JOURNAL OF PLANT PATHOLOGY (2021)

Article Biochemical Research Methods

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

Emmanuel Paradis et al.

BIOINFORMATICS (2019)

Article Biochemical Research Methods

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Kazutaka Katoh et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Multidisciplinary Sciences

D-GENIES: dot plot large genomes in an interactive, efficient and simple way

Floreal Cabanettes et al.

Article Biochemistry & Molecular Biology

POPHELPER: an R package and web app to analyse and visualize population structure

R. M. Francis

MOLECULAR ECOLOGY RESOURCES (2017)

Article Agronomy

Homothallism in Pseudoperonospora humuli

D. H. Gent et al.

PLANT PATHOLOGY (2017)

Article Biochemical Research Methods

Assemblytics: a web analytics tool for the detection of variants from an assembly

Maria Nattestad et al.

BIOINFORMATICS (2016)

Article Plant Sciences

Identification of Pseudoperonospora cubensis using real-time PCR and high resolution melting (HRM) analysis

Jeong Hwan Lee et al.

JOURNAL OF GENERAL PLANT PATHOLOGY (2016)

Review Plant Sciences

Epidemiology and Population Biology of Pseudoperonospora cubensis: A Model System for Management of Downy Mildews

Peter S. Ojiambo et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 53 (2015)

Review Plant Sciences

Speciation in Fungal and Oomycete Plant Pathogens

Silvia Restrepo et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 52 (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Multidisciplinary Sciences

The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

Erica M. Goss et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Biotechnology & Applied Microbiology

A genomics perspective on cucurbit-oomycete interactions

Alyssa Burkhardt et al.

PLANT BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

H. E. L. Lischer et al.

BIOINFORMATICS (2012)

Article Evolutionary Biology

raxmlGUI: a graphical front-end for RAxML

Daniele Silvestro et al.

ORGANISMS DIVERSITY & EVOLUTION (2012)

Article Biodiversity Conservation

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

Dent A. Earl et al.

CONSERVATION GENETICS RESOURCES (2012)

Article Plant Sciences

The cucurbit downy mildew pathogen Pseudoperonospora cubensis

Elizabeth A. Savory et al.

MOLECULAR PLANT PATHOLOGY (2011)

Review Biochemistry & Molecular Biology

Mutational Dynamics of Microsatellites

Atul Bhargava et al.

MOLECULAR BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

Inferring weak population structure with the assistance of sample group information

Melissa J. Hubisz et al.

MOLECULAR ECOLOGY RESOURCES (2009)

Article Multidisciplinary Sciences

Molecular Taxonomy of Phytopathogenic Fungi: A Case Study in Peronospora

Markus Goeker et al.

PLOS ONE (2009)

Article Biochemical Research Methods

Touchdown PCR for increased specificity and sensitivity in PCR amplification

Darren J. Korbie et al.

NATURE PROTOCOLS (2008)

Article Computer Science, Interdisciplinary Applications

The ade4 package: Implementing the duality diagram for ecologists

Stephane Dray et al.

JOURNAL OF STATISTICAL SOFTWARE (2007)

Article Biochemistry & Molecular Biology

A simple PCR procedure for discovering microsatellites from small insert libraries

X. W. Wang et al.

MOLECULAR ECOLOGY NOTES (2007)

Article Genetics & Heredity

How do obligate parasites evolve?: A multi-gene phylogenetic analysis of downy mildews

Markus Goeker et al.

FUNGAL GENETICS AND BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Automated binning of microsatellite alleles: problems and solutions

W. Amos et al.

MOLECULAR ECOLOGY NOTES (2007)

Article Biochemistry & Molecular Biology

HIERFSTAT, a package for R to compute and test hierarchical F-statistics

J Goudet

MOLECULAR ECOLOGY NOTES (2005)

Article Biochemistry & Molecular Biology

SPAGEDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels

OJ Hardy et al.

MOLECULAR ECOLOGY NOTES (2002)