相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The impact of genetic diversity on gene essentiality within the Escherichia coli species
Francois Rousset et al.
NATURE MICROBIOLOGY (2021)
High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities
Juan Nogales et al.
ENVIRONMENTAL MICROBIOLOGY (2020)
SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Laurent Heirendt et al.
NATURE PROTOCOLS (2019)
Acetate Metabolism and the Inhibition of Bacterial Growth by Acetate
Stephane Pinhal et al.
JOURNAL OF BACTERIOLOGY (2019)
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Jean-Christophe Lachance et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Energy metabolism controls phenotypes by protein efficiency and allocation
Yu Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Measuring Cellular Biomass Composition for Computational Biology Applications
Ashley E. Beck et al.
PROCESSES (2018)
Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes
Joana C. Xavier et al.
METABOLIC ENGINEERING (2017)
iML1515, a knowledgebase that computes Escherichia coli traits
Jonathan M. Monk et al.
NATURE BIOTECHNOLOGY (2017)
Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models
Qianqian Yuan et al.
PLOS ONE (2017)
Robust Analysis of Fluxes in Genome-Scale Metabolic Pathways
Michael MacGillivray et al.
SCIENTIFIC REPORTS (2017)
Next-generation genome-scale models for metabolic engineering
Zachary A. King et al.
CURRENT OPINION IN BIOTECHNOLOGY (2015)
Physiological, biomass elemental composition and proteomic analyses of Escherichia coli ammonium-limited chemostat growth, and comparison with iron- and glucose-limited chemostat growth
James Patrick Folsom et al.
MICROBIOLOGY-SGM (2015)
Overflow metabolism in Escherichia coli results from efficient proteome allocation
Markus Basan et al.
NATURE (2015)
Optimizing genome-scale network reconstructions
Jonathan Monk et al.
NATURE BIOTECHNOLOGY (2014)
Constraint-based models predict metabolic and associated cellular functions
Aarash Bordbar et al.
NATURE REVIEWS GENETICS (2014)
Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions
Jeffrey D. Orth et al.
BMC SYSTEMS BIOLOGY (2012)
Recent advances in reconstruction and applications of genome-scale metabolic models
Tae Yong Kim et al.
CURRENT OPINION IN BIOTECHNOLOGY (2012)
Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
Ines Thiele et al.
PLOS ONE (2012)
Multidimensional Optimality of Microbial Metabolism
Robert Schuetz et al.
SCIENCE (2012)
In silico method for modelling metabolism and gene product expression at genome scale
Joshua A. Lerman et al.
NATURE COMMUNICATIONS (2012)
An Experimentally Validated Genome-Scale Metabolic Reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228
Yu-Chieh Liao et al.
JOURNAL OF BACTERIOLOGY (2011)
A comprehensive genome-scale reconstruction of Escherichia coli metabolism-2011
Jeffrey D. Orth et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
The biomass objective function
Adam M. Feist et al.
CURRENT OPINION IN MICROBIOLOGY (2010)
Genome-scale metabolic network analysis and drug targeting of multi-drug resistant pathogen Acinetobacter baumannii AYE
Hyun Uk Kim et al.
MOLECULAR BIOSYSTEMS (2010)
Omic data from evolved E-coli are consistent with computed optimal growth from genome-scale models
Nathan E. Lewis et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
What is flux balance analysis?
Jeffrey D. Orth et al.
NATURE BIOTECHNOLOGY (2010)
A protocol for generating a high-quality genome-scale metabolic reconstruction
Ines Thiele et al.
NATURE PROTOCOLS (2010)
Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli
Jie Yuan et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
Applications of genome-scale metabolic reconstructions
Matthew A. Oberhardt et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory
Juan Nogales et al.
BMC SYSTEMS BIOLOGY (2008)
Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1
Matthew A. Oberhardt et al.
JOURNAL OF BACTERIOLOGY (2008)
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
Jacek Puchalka et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
Robert Schuetz et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Conservation of the metabolomic response to starvation across two divergent microbes
Matthew J. Brauer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Sulfur and nitrogen limitation in Escherichia coli K-12:: Specific homeostatic responses
P Gyaneshwar et al.
JOURNAL OF BACTERIOLOGY (2005)
分享论文
