相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
Rose Oughtred et al.
PROTEIN SCIENCE (2021)
PICKLE 3.0: enriching the human meta-database with the mouse protein interactome extended via mouse-human orthology
Georgios N. Dimitrakopoulos et al.
BIOINFORMATICS (2021)
HVIDB: a comprehensive database for human-virus protein-protein interactions
Xiaodi Yang et al.
BRIEFINGS IN BIOINFORMATICS (2021)
A reference map of the human binary protein interactome
Katja Luck et al.
NATURE (2020)
The HDOCK server for integrated protein-protein docking
Yumeng Yan et al.
NATURE PROTOCOLS (2020)
APID database: redefining protein-protein interaction experimental evidences and binary interactomes
Diego Alonso-Lopez et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2019)
Assembling multidomain protein structures through analogous global structural alignments
Xiaogen Zhou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
MatrixDB: integration of new data with a focus on glycosaminoglycan interactions
Olivier Clerc et al.
NUCLEIC ACIDS RESEARCH (2019)
CORUM: the comprehensive resource of mammalian protein complexes2019
Madalina Giurgiu et al.
NUCLEIC ACIDS RESEARCH (2019)
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2019)
BioPlex Display: An Interactive Suite for Large-Scale AP-MS Protein-Protein Interaction Data
Devin K. Schweppe et al.
JOURNAL OF PROTEOME RESEARCH (2018)
NGL viewer: web-based molecular graphics for large complexes
Alexander S. Rose et al.
BIOINFORMATICS (2018)
Interactome INSIDER: a structural interactome browser for genomic studies
Michael J. Meyer et al.
NATURE METHODS (2018)
A scored human protein-protein interaction network to catalyze genomic interpretation
Taibo Li et al.
NATURE METHODS (2017)
The TissueNet v.2 database: A quantitative view of protein-protein interactions across human tissues
Omer Basha et al.
NUCLEIC ACIDS RESEARCH (2017)
HDNetDB: A Molecular Interaction Database for Network-Oriented Investigations into Huntington's Disease
Ravi Kiran Reddy Kalathur et al.
SCIENTIFIC REPORTS (2017)
Integrated interactions database: tissue-specific view of the human and model organism interactomes
Max Kotlyar et al.
NUCLEIC ACIDS RESEARCH (2016)
PPIM: A Protein-Protein Interaction Database for Maize
Guanghui Zhu et al.
PLANT PHYSIOLOGY (2016)
Analyzing and interpreting genome data at the network level with ConsensusPathDB
Ralf Herwig et al.
NATURE PROTOCOLS (2016)
HPIDB 2.0: a curated database for host-pathogen interactions
Mais G. Ammari et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
PTIR: Predicted Tomato Interactome Resource
Junyang Yue et al.
SCIENTIFIC REPORTS (2016)
HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species
Yosvany Lopez et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2015)
The MIntAct project-IntAct as a common curation platform for 11 molecular interaction databases
Sandra Orchard et al.
NUCLEIC ACIDS RESEARCH (2014)
3did: a catalog of domain-based interactions of known three-dimensional structure
Roberto Mosca et al.
NUCLEIC ACIDS RESEARCH (2014)
Non-Redundant Unique Interface Structures as Templates for Modeling Protein Interactions
Engin Cukuroglu et al.
PLOS ONE (2014)
INstruct: a database of high-quality 3D structurally resolved protein interactome networks
Michael J. Meyer et al.
BIOINFORMATICS (2013)
Protein-protein interaction networks studies and importance of 3D structure knowledge
Hui-Chun Lu et al.
EXPERT REVIEW OF PROTEOMICS (2013)
Interactome3D: adding structural details to protein networks
Roberto Mosca et al.
NATURE METHODS (2013)
InnateDB: systems biology of innate immunity and beyond-recent updates and continuing curation
Karin Breuer et al.
NUCLEIC ACIDS RESEARCH (2013)
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset
Shingo Kikugawa et al.
BMC SYSTEMS BIOLOGY (2012)
Constructing structural networks of signaling pathways on the proteome scale
Guray Kuzu et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2012)
Multiple Binding Sites on the Pyrin Domain of ASC Protein Allow Self-association and Interaction with NLRP3 Protein
Parimala R. Vajjhala et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
Sandra Orchard et al.
NATURE METHODS (2012)
A comprehensive manually curated protein-protein interaction database for the Death Domain superfamily
Dongseop Kwon et al.
NUCLEIC ACIDS RESEARCH (2012)
HotRegion: a database of predicted hot spot clusters
Engin Cukuroglu et al.
NUCLEIC ACIDS RESEARCH (2012)
MINT, the molecular interaction database: 2012 update
Luana Licata et al.
NUCLEIC ACIDS RESEARCH (2012)
TRIP Database 2.0: A Manually Curated Information Hub for Accessing TRP Channel Interaction Network
Young-Cheul Shin et al.
PLOS ONE (2012)
IDDI: integrated domain-domain interaction and protein interaction analysis system
Yul Kim et al.
PROTEOME SCIENCE (2012)
Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database
George R. Bickerton et al.
BMC BIOINFORMATICS (2011)
Next-generation sequencing to generate interactome datasets
Haiyuan Yu et al.
NATURE METHODS (2011)
DIMA 3.0: Domain Interaction Map
Qibin Luo et al.
NUCLEIC ACIDS RESEARCH (2011)
Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library
Brian G. Pierce et al.
PLOS ONE (2011)
Construction of a Large Extracellular Protein Interaction Network and Its Resolution by Spatiotemporal Expression Profiling
Stephen Martin et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M. Brandao et al.
BMC BIOINFORMATICS (2009)
Predicting druggable binding sites at the protein-protein interface
Jonathan C. Fuller et al.
DRUG DISCOVERY TODAY (2009)
An empirical framework for binary interactome mapping
Kavitha Venkatesan et al.
NATURE METHODS (2009)
Network pharmacology: the next paradigm in drug discovery
Andrew L. Hopkins
NATURE CHEMICAL BIOLOGY (2008)
Estimating the size of the human interactome
Michael P. H. Stumpf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Relating three-dimensional structures to protein networks provides evolutionary insights
Philip M. Kim et al.
SCIENCE (2006)
Can we rationally design promiscuous drugs?
AL Hopkins et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
Real-time PCR-based method for the estimation of genome sizes
J Wilhelm et al.
NUCLEIC ACIDS RESEARCH (2003)
BIND: the Biomolecular Interaction Network Database
GD Bader et al.
NUCLEIC ACIDS RESEARCH (2003)
Principles of docking: An overview of search algorithms and a guide to scoring functions
I Halperin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
I Xenarios et al.
NUCLEIC ACIDS RESEARCH (2002)