相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Cryo-Electron Microscopy: Moving Beyond X-Ray Crystal Structures for Drug Receptors and Drug Development
Javier Garcia-Nafria et al.
ANNUAL REVIEW OF PHARMACOLOGY AND TOXICOLOGY, VOL 60 (2020)
Electron cryo-microscopy for elucidating the dynamic nature of live-protein complexes
Hideki Shigematsu
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2020)
Improved protein structure prediction using potentials from deep learning
Andrew W. Senior et al.
NATURE (2020)
High precision protein functional site detection using 3D convolutional neural networks
Wen Torng et al.
BIOINFORMATICS (2019)
Archiving and disseminating integrative structure models
Brinda Vallat et al.
JOURNAL OF BIOMOLECULAR NMR (2019)
Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints
Joe G. Greener et al.
NATURE COMMUNICATIONS (2019)
Towards region-specific propagation of protein functions
Da Chen Emily Koo et al.
BIOINFORMATICS (2019)
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
Alex L. Mitchell et al.
NUCLEIC ACIDS RESEARCH (2019)
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Naihui Zhou et al.
GENOME BIOLOGY (2019)
Explainability Methods for Graph Convolutional Neural Networks
Phillip E. Pope et al.
2019 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2019) (2019)
deepNF: deep network fusion for protein function prediction
Vladimir Gligorijevic et al.
BIOINFORMATICS (2018)
Methods for interpreting and understanding deep neural networks
Gregoire Montavon et al.
DIGITAL SIGNAL PROCESSING (2018)
SWISS-MODEL: homology modelling of protein structures and complexes
Andrew Waterhouse et al.
NUCLEIC ACIDS RESEARCH (2018)
EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation
Afshine Amidi et al.
PEERJ (2018)
DeepSF: deep convolutional neural network for mapping protein sequences to folds
Jie Hou et al.
BIOINFORMATICS (2018)
DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier
Maxat Kulmanov et al.
BIOINFORMATICS (2018)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
Geometric Deep Learning Going beyond Euclidean data
Michael M. Bronstein et al.
IEEE SIGNAL PROCESSING MAGAZINE (2017)
Convolutional Embedding of Attributed Molecular Graphs for Physical Property Prediction
Connor W. Coley et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2017)
Protein structure determination using metagenome sequence data
Sergey Ovchinnikov et al.
SCIENCE (2017)
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
Sheng Wang et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
DeepLoc: prediction of protein subcellular localization using deep learning
Jose Juan Almagro Armenteros et al.
BIOINFORMATICS (2017)
DeepSite: protein-binding site predictor using 3D-convolutional neural networks
J. Jimenez et al.
BIOINFORMATICS (2017)
Compact Integration of Multi-Network Topology for Functional Analysis of Genes
Hyunghoon Cho et al.
CELL SYSTEMS (2016)
FFPred 3: feature-based function prediction for all Gene Ontology domains
Domenico Cozzetto et al.
SCIENTIFIC REPORTS (2016)
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Yuxiang Jiang et al.
GENOME BIOLOGY (2016)
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation
Sayoni Das et al.
BIOINFORMATICS (2015)
Predicting effects of noncoding variants with deep learning-based sequence model
Jian Zhou et al.
NATURE METHODS (2015)
DISOPRED3: precise disordered region predictions with annotated protein-binding activity
David T. Jones et al.
BIOINFORMATICS (2015)
Pfam: the protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2014)
ModBase, a database of annotated comparative protein structure models and associated resources
Ursula Pieper et al.
NUCLEIC ACIDS RESEARCH (2014)
A large-scale evaluation of computational protein function prediction
Predrag Radivojac et al.
NATURE METHODS (2013)
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions
Jianyi Yang et al.
NUCLEIC ACIDS RESEARCH (2013)
CombFunc: predicting protein function using heterogeneous data sources
Mark N. Wass et al.
NUCLEIC ACIDS RESEARCH (2012)
Moonlighting proteins: An intriguing mode of multitasking
Daphne H. E. W. Huberts et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2010)
ResBoost: characterizing and predicting catalytic residues in enzymes
Ron Alterovitz et al.
BMC BIOINFORMATICS (2009)
Predicting gene function in a hierarchical context with an ensemble of classifiers
Yuanfang Guan et al.
GENOME BIOLOGY (2008)
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
Lourdes Pena-Castillo et al.
GENOME BIOLOGY (2008)
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
Sara Mostafavi et al.
GENOME BIOLOGY (2008)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
An introduction to ROC analysis
Tom Fawcett
PATTERN RECOGNITION LETTERS (2006)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
Supra-domains: Evolutionary units larger than single protein domains
C Vogel et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data
CT Porter et al.
NUCLEIC ACIDS RESEARCH (2004)
PISCES: a protein sequence culling server
GL Wang et al.
BIOINFORMATICS (2003)
Structure validation by Cα geometry:: φ,ψ and Cβ deviation
SC Lovell et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)
Contact order and ab initio protein structure prediction
R Bonneau et al.
PROTEIN SCIENCE (2002)
Predicting Gene Ontology functions from ProDom and CDD protein domains
J Schug et al.
GENOME RESEARCH (2002)
The ENZYME database in 2000
A Bairoch
NUCLEIC ACIDS RESEARCH (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)