4.8 Article

In situ cryo-electron tomography reveals gradient organization of ribosome biogenesis in intact nucleoli

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Structure of the Maturing 90S Pre-ribosome in Association with the RNA Exosome

Benjamin Lau et al.

Summary: During ribosome assembly, the exosome complex is involved in the removal of 5'-ETS and structural remodeling of the 90S pre-ribosome, driving the synthesis of eukaryotic ribosomal subunits.

MOLECULAR CELL (2021)

Article Multidisciplinary Sciences

Composition-dependent thermodynamics of intracellular phase separation

Joshua A. Riback et al.

NATURE (2020)

Article Multidisciplinary Sciences

Cryo-EM structure of 90S small ribosomal subunit precursors in transition states

Yifei Du et al.

SCIENCE (2020)

Article Multidisciplinary Sciences

Topaz-Denoise: general deep denoising models for cryoEM and cryoET

Tristan Bepler et al.

NATURE COMMUNICATIONS (2020)

Review Cell Biology

Ribosome assembly coming into focus

Sebastian Klinge et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

Thomas D. Goddard et al.

PROTEIN SCIENCE (2018)

Article Multidisciplinary Sciences

Modular assembly of the nucleolar pre-60S ribosomal subunit

Zahra Assur Sanghai et al.

NATURE (2018)

Article Biochemistry & Molecular Biology

Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins

Miroslava Schaffer et al.

JOURNAL OF STRUCTURAL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging

Wim J. H. Hagen et al.

JOURNAL OF STRUCTURAL BIOLOGY (2017)

Letter Biochemical Research Methods

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

Shawn Q. Zheng et al.

NATURE METHODS (2017)

Article Biochemistry & Molecular Biology

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage

Jingdong Cheng et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

The complete structure of the small-subunit processome

Jonas Barandun et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Structural Heterogeneity in Pre-40S Ribosomes

Matthew C. Johnson et al.

STRUCTURE (2017)

Article Biochemistry & Molecular Biology

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage

Jingdong Cheng et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemistry & Molecular Biology

The complete structure of the small-subunit processome

Jonas Barandun et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Article Biochemical Research Methods

A pipeline approach to single-particle processing in RELION

Rafael Fernandez-Leiro et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes

Lukas Kater et al.

Article Biochemistry & Molecular Biology

Potent, Reversible, and Specific Chemical Inhibitors of Eukaryotic Ribosome Biogenesis

Shigehiro A. Kawashima et al.

Article Biochemistry & Molecular Biology

Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome

Markus Kornprobst et al.

Article Biochemistry & Molecular Biology

Coexisting Liquid Phases Underlie Nucleolar Subcompartments

Marina Feric et al.

Article Multidisciplinary Sciences

Structure of RNA polymerase I transcribing ribosomal DNA genes

Simon Neyer et al.

NATURE (2016)

Article Biochemical Research Methods

Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION

Tanmay A. M. Bharat et al.

NATURE PROTOCOLS (2016)

Article Biochemistry & Molecular Biology

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

Alexis Rohou et al.

JOURNAL OF STRUCTURAL BIOLOGY (2015)

Review Plant Sciences

Plant-Specific Features of Ribosome Biogenesis

Benjamin L. Weis et al.

TRENDS IN PLANT SCIENCE (2015)

Article Biochemistry & Molecular Biology

The Drug Diazaborine Blocks Ribosome Biogenesis by Inhibiting the AAA-ATPase Drg1

Mathias Loibl et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

Robust membrane detection based on tensor voting for electron tomography

Antonio Martinez-Sanchez et al.

JOURNAL OF STRUCTURAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

M-free: Scoring the reference bias in sub-tomogram averaging and template matching

Zhou Yu et al.

JOURNAL OF STRUCTURAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

The evolution of the ribosome biogenesis pathway from a yeast perspective

Ingo Ebersberger et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Opening windows into the cell: focused-ion-beam milling for cryo-electron tomography

Elizabeth Villa et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2013)

Article Genetics & Heredity

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

John L. Woolford et al.

GENETICS (2013)

Article Biochemistry & Molecular Biology

PyTom: A python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis

Thomas Hrabe et al.

JOURNAL OF STRUCTURAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel

Bettina Bradatsch et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Review Cell Biology

The multifunctional nucleolus

Francois-Michel Boisvert et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Automated electron microscope tomography using robust prediction of specimen movements

DN Mastronarde

JOURNAL OF STRUCTURAL BIOLOGY (2005)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Multidisciplinary Sciences

Identification of macromolecular complexes in cryoelectron tomograms of phantom cells

AS Frangakis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Toward detecting and identifying macromolecules in a cellular context:: Template matching applied to electron tomograms

J Böhm et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)