4.8 Article

Live-cell imaging of circadian clock protein dynamics in CRISPR-generated knock-in cells

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Mathematics, Applied

Stability and Sensitivity Analysis of Bird Flapping Flight

Gianmarco Ducci et al.

Summary: This study investigates the stability analysis of flapping flight, finding that various factors influence flight in trimmed state.

JOURNAL OF NONLINEAR SCIENCE (2021)

Review Cell Biology

Heterogeneity in mRNA Translation

Stijn Sonneveld et al.

TRENDS IN CELL BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Isoform-selective regulation of mammalian cryptochromes

Simon Miller et al.

NATURE CHEMICAL BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Heritable gene expression variability and stochasticity govern clonal heterogeneity in circadian period

K. L. Nikhil et al.

PLOS BIOLOGY (2020)

Article Physiology

Generation of Human CRY1 and CRY2 Knockout Cells Using Duplex CRISPR/Cas9 Technology

Teresa Boerding et al.

FRONTIERS IN PHYSIOLOGY (2019)

Article Biochemistry & Molecular Biology

Systematic Enzyme Mapping of Cellular Metabolism by Phasor-Analyzed Label-Free NAD(P)H Fluorescence Lifetime Imaging

Ruth Leben et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Article Multidisciplinary Sciences

Entrainment of superoxide rhythm by menadione in HCT116 colon cancer cells

Uma Kizhuveetil et al.

SCIENTIFIC REPORTS (2019)

Article Biotechnology & Applied Microbiology

Inhibition of 53BP1 favors homology-dependent DNA repair and increases CRISPR-Cas9 genome-editing efficiency

Marella D. Canny et al.

NATURE BIOTECHNOLOGY (2018)

Article Multidisciplinary Sciences

The choroid plexus is an important circadian clock component

Jihwan Myung et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

An evolutionary hotspot defines functional differences between CRYPTOCHROMES

Clark Rosensweig et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Optimal fluorescent protein tags for quantifying protein oligomerization in living cells

Valentin Dunsing et al.

SCIENTIFIC REPORTS (2018)

Article Engineering, Biomedical

Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs

Jennifer Listgarten et al.

NATURE BIOMEDICAL ENGINEERING (2018)

Article Multidisciplinary Sciences

Translational switching of Cry1 protein expression confers reversible control of circadian behavior in arrhythmic Cry-deficient mice

Elizabeth S. Maywood et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Biochemical Research Methods

mScarlet: a bright monomeric red fluorescent protein for cellular imaging

Daphne S. Bindels et al.

NATURE METHODS (2017)

Review Genetics & Heredity

Exploring the potential of genome editing CRISPR-Cas9 technology

Vijai Singh et al.

Article Biochemistry & Molecular Biology

Macromolecular Assemblies of the Mammalian Circadian Clock

Rajindra P. Aryal et al.

MOLECULAR CELL (2017)

Article Biochemistry & Molecular Biology

A Slow Conformational Switch in the BMAL1 Transactivation Domain Modulates Circadian Rhythms

Chelsea L. Gustafson et al.

MOLECULAR CELL (2017)

Article Multidisciplinary Sciences

Circadian repressors CRY1 and CRY2 broadly interact with nuclear receptors and modulate transcriptional activity

Anna Kriebs et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Characterization of a spectrally diverse set of fluorescent proteins as FRET acceptors for mTurquoise2

Marieke Mastop et al.

SCIENTIFIC REPORTS (2017)

Article Cell Biology

FAD Regulates CRYPTOCHROME Protein Stability and Circadian Clock in Mice

Arisa Hirano et al.

CELL REPORTS (2017)

Article Cell Biology

Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver

Jingkui Wang et al.

CELL METABOLISM (2017)

Article Biochemistry & Molecular Biology

The ratio of intracellular CRY proteins determines the clock period length

Yang Li et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2016)

Article Biochemical Research Methods

MetaCycle: an integrated R package to evaluate periodicity in large scale data

Gang Wu et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Visualizing and Quantifying Intracellular Behavior and Abundance of the Core Circadian Clock Protein PERIOD2

Nicola J. Smyllie et al.

CURRENT BIOLOGY (2016)

Article Biotechnology & Applied Microbiology

Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9

John G. Doench et al.

NATURE BIOTECHNOLOGY (2016)

Article Biochemical Research Methods

Genome editing comes of age

Jin-Soo Kim

NATURE PROTOCOLS (2016)

Article Multidisciplinary Sciences

Rhythmic expression of cryptochrome induces the circadian clock of arrhythmic suprachiasmatic nuclei through arginine vasopressin signaling

Mathew D. Edwards et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins

Ryohei Narumi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Mathematical & Computational Biology

Mathematical Frameworks for Oscillatory Network Dynamics in Neuroscience

Peter Ashwin et al.

JOURNAL OF MATHEMATICAL NEUROSCIENCE (2016)

Article Biotechnology & Applied Microbiology

Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR

Maximilian Haeussler et al.

GENOME BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System

Bernd Zetsche et al.

Article Biochemistry & Molecular Biology

Cryptochrome 1 regulates the circadian clock through dynamic interactions with the BMAL1 C terminus

Haiyan Xu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Cryptochrome 1 regulates the circadian clock through dynamic interactions with the BMAL1 C terminus

Haiyan Xu et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Emerging Models for the Molecular Basis of Mammalian Circadian Timing

Chelsea L. Gustafson et al.

BIOCHEMISTRY (2015)

Article Multidisciplinary Sciences

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool

Manuel Stemmer et al.

PLOS ONE (2015)

Article Biochemistry & Molecular Biology

In Vivo Role of Phosphorylation of Cryptochrome 2 in the Mouse Circadian Clock

Arisa Hirano et al.

MOLECULAR AND CELLULAR BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Specificity in Circadian Clock Feedback from Targeted Reconstitution of the NuRD Corepressor

Jin Young Kim et al.

MOLECULAR CELL (2014)

Letter Biochemical Research Methods

Improved vectors and genome-wide libraries for CRISPR screening

Neville E. Sanjana et al.

NATURE METHODS (2014)

Article Biochemistry & Molecular Biology

Easy quantitative assessment of genome editing by sequence trace decomposition

Eva K. Brinkman et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biotechnology & Applied Microbiology

High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells

Yanfang Fu et al.

NATURE BIOTECHNOLOGY (2013)

Article Multidisciplinary Sciences

An MLL-dependent network sustains hematopoiesis

Erika L. Artinger et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Biotechnology & Applied Microbiology

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering

Thomas Gaj et al.

TRENDS IN BIOTECHNOLOGY (2013)

Article Biochemistry & Molecular Biology

Identification of a Novel Cryptochrome Differentiating Domain Required for Feedback Repression in Circadian Clock Function

Sanjoy K. Khan et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Article Biochemistry & Molecular Biology

Primer3-new capabilities and interfaces

Andreas Untergasser et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Delay in Feedback Repression by Cryptochrome 1 Is Required for Circadian Clock Function

Maki Ukai-Tadenuma et al.

Article Biochemistry & Molecular Biology

Biochemical Analysis of the Canonical Model for the Mammalian Circadian Clock

Rui Ye et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Biochemical Research Methods

Tuning the Mammalian Circadian Clock: Robust Synergy of Two Loops

Angela Relogio et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Review Biochemistry & Molecular Biology

Of switches and hourglasses: regulation of subcellular traffic in circadian clocks by phosphorylation

Oezguer Tataroglu et al.

EMBO REPORTS (2010)

Article Multidisciplinary Sciences

CKIε/δ-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock

Yasushi Isojima et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

AMPK Regulates the Circadian Clock by Cryptochrome Phosphorylation and Degradation

Katja A. Lamia et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Oscillation patterns in negative feedback loops

Simone Pigolotti et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Stochastic mRNA synthesis in mammalian cells

Arjun Raj et al.

PLOS BIOLOGY (2006)

Article Biochemical Research Methods

Fluorescence cross-correlation spectroscopy in living cells

K Bacia et al.

NATURE METHODS (2006)

Article Biochemistry & Molecular Biology

Control of mammalian circadian rhythm by CKIε-regulated proteasome-mediated PER2 degradation

EJ Eide et al.

MOLECULAR AND CELLULAR BIOLOGY (2005)

Article Multidisciplinary Sciences

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues

SH Yoo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Posttranslational mechanisms regulate the mammalian circadian clock

C Lee et al.

Article Biochemistry & Molecular Biology

Nonredundant roles of the mPer1 and mPer2 genes in the mammalian circadian clock

BH Zheng et al.