相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The acid response network of Staphylococcus aureus
Chunyi Zhou et al.
CURRENT OPINION IN MICROBIOLOGY (2020)
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
Marinka Zitnik et al.
INFORMATION FUSION (2019)
BACTOMEa reference database to explore the sequence- and gene expression-variation landscape of Pseudomonas aeruginosa clinical isolates
Klaus Hornischer et al.
NUCLEIC ACIDS RESEARCH (2019)
Genetically diverse Pseudomonas aeruginosa populations display similar transcriptomic profiles in a cystic fibrosis explanted lung
Adrian Kordes et al.
NATURE COMMUNICATIONS (2019)
CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses
Pedro S. T. Russo et al.
BMC BIOINFORMATICS (2018)
Toward an integrated map of genetic interactions in cancer cells
Benedikt Rauscher et al.
MOLECULAR SYSTEMS BIOLOGY (2018)
Pseudomonas aeruginosa transcriptome during human infection
Daniel M. Cornforth et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Long Noncoding RNA SSR42 Controls Staphylococcus aureus Alpha-Toxin Transcription in Response to Environmental Stimuli
Jessica Horn et al.
JOURNAL OF BACTERIOLOGY (2018)
High-resolution in situ transcriptomics of Pseudomonas aeruginosa unveils genotype independent patho-phenotypes in cystic fibrosis lungs
Elio Rossi et al.
NATURE COMMUNICATIONS (2018)
Enhancing 2-Ketogluconate Production of Pseudomonas plecoglossicida JUIM01 by Maintaining the Carbon Catabolite Repression of 2-Ketogluconate Metabolism
Wenjing Sun et al.
MOLECULES (2018)
6S RNA, a Global Regulator of Transcription
Karen M. Wassarman
MICROBIOLOGY SPECTRUM (2018)
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Alice R. Wattam et al.
NUCLEIC ACIDS RESEARCH (2017)
Tissue dual RNA-seq allows fast discovery of infection-specific functions and riboregulators shaping host-pathogen transcriptomes
Aaron M. Nuss et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Alternative transcriptional regulation in genome-reduced bacteria
Samuel Miravet-Verde et al.
CURRENT OPINION IN MICROBIOLOGY (2017)
Bacterial Stress Responses during Host Infection
Ferric C. Fang et al.
CELL HOST & MICROBE (2016)
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
Minoru Kanehisa et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Mapping the Regulatory Network for Salmonella enterica Serovar Typhimurium Invasion
Carol Smith et al.
MBIO (2016)
Next-Generation High-Throughput Functional Annotation of Microbial Genomes
Ralph S. Baric et al.
MBIO (2016)
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database
James J. Davis et al.
FRONTIERS IN MICROBIOLOGY (2016)
The impact of hypoxia on bacterial infection
Kirsten Schaffer et al.
FEBS JOURNAL (2015)
Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori
Thorsten Bischler et al.
METHODS (2015)
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
Tauno Metsalu et al.
NUCLEIC ACIDS RESEARCH (2015)
Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis
Kemal Avican et al.
PLOS PATHOGENS (2015)
Insights into the Staphylococcus aureus-Host Interface: Global Changes in Host and Pathogen Gene Expression in a Rabbit Skin Infection Model
Natalia Malachowa et al.
PLOS ONE (2015)
Ammonium Metabolism Enzymes Aid Helicobacter pylori Acid Resistance
Erica F. Miller et al.
JOURNAL OF BACTERIOLOGY (2014)
The metabolic enzyme AdhE controls the virulence of Escherichia coli O157:H7
Katherine S. H. Beckham et al.
MOLECULAR MICROBIOLOGY (2014)
PATRIC, the bacterial bioinformatics database and analysis resource
Alice R. Wattam et al.
NUCLEIC ACIDS RESEARCH (2014)
Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria
Jarmila Hnilicova et al.
NUCLEIC ACIDS RESEARCH (2014)
Dissemination of 6S RNA among Bacteria
Stefanie Wehner et al.
RNA BIOLOGY (2014)
High-Resolution Transcriptomic Analysis of the Adaptive Response of Staphylococcus aureus during Acute and Chronic Phases of Osteomyelitis
Anna K. Szafranska et al.
MBIO (2014)
Ribonucleotide reductases: essential enzymes for bacterial life
Eduard Torrents
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2014)
Coping with low pH: molecular strategies in neutralophilic bacteria
Peter Lund et al.
FEMS MICROBIOLOGY REVIEWS (2014)
Iron in Infection and Immunity
James E. Cassat et al.
CELL HOST & MICROBE (2013)
An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium
Carsten Kroeger et al.
CELL HOST & MICROBE (2013)
Deletions in the pyruvate pathway of Salmonella Typhimurium alter SPI1-mediated gene expression and infectivity
Jason Abernathy et al.
JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY (2013)
A Novel Mouse Model of Staphylococcus aureus Chronic Osteomyelitis That Closely Mimics the Human Infection An Integrated View of Disease Pathogenesis
Sarah A. Horst et al.
AMERICAN JOURNAL OF PATHOLOGY (2012)
Redox Active Thiol Sensors of Oxidative and Nitrosative Stress
Andres Vazquez-Torres
ANTIOXIDANTS & REDOX SIGNALING (2012)
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
Brian J. Haas et al.
BMC GENOMICS (2012)
Pathoadaptive Conditional Regulation of the Type VI Secretion System in Vibrio cholerae O1 Strains
Takahiko Ishikawa et al.
INFECTION AND IMMUNITY (2012)
Peroxide-Sensing Transcriptional Regulators in Bacteria
James M. Dubbs et al.
JOURNAL OF BACTERIOLOGY (2012)
Bacterial Hydrolysis of Host Glycoproteins - Powerful Protein Modification and Efficient Nutrient Acquisition
Julia Garbe et al.
JOURNAL OF INNATE IMMUNITY (2012)
Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling
Donghyuk Kim et al.
PLOS GENETICS (2012)
RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression
Anjali Mandlik et al.
CELL HOST & MICROBE (2011)
Chronic and acute infection of the gall bladder by Salmonella Typhi: understanding the carrier state
Geoffrey Gonzalez-Escobedo et al.
NATURE REVIEWS MICROBIOLOGY (2011)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)
Microbial thermosensors
Birgit Klinkert et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2009)
Bile acids: Chemistry, pathochemistry, biology, pathobiology, and therapeutics
A. F. Hofmann et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2008)
Widespread distribution in pathogenic bacteria of di-iron proteins that repair oxidative and nitrosative damage to iron-sulfur centers
Tim W. Overton et al.
JOURNAL OF BACTERIOLOGY (2008)
Comparative genomic reconstruction of transcriptional regulatory networks in bacteria
Dmitry A. Rodionov
CHEMICAL REVIEWS (2007)
Regulation of Helicobacter pylori cagA expression in response to salt
John T. Loh et al.
CANCER RESEARCH (2007)
6S RNA: a small RNA regulator of transcription
Karen M. Wassarman
CURRENT OPINION IN MICROBIOLOGY (2007)
Physiology of tmRNA: what gets tagged and why?
Kenneth C. Keiler
CURRENT OPINION IN MICROBIOLOGY (2007)
Microarray analysis of the osmotic stress response in Pseudomonas aeruginosa
A Aspedon et al.
JOURNAL OF BACTERIOLOGY (2006)
Bacterial regulatory networks are extremely flexible in evolution
Irma Lozada-Chavez et al.
NUCLEIC ACIDS RESEARCH (2006)
The interaction between bacteria and bile
M Begley et al.
FEMS MICROBIOLOGY REVIEWS (2005)
Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures
Q Hua et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Global iron-dependent gene regulation in Escherichia coli -: A new mechanism for iron homeostasis
JP McHugh et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Interactions among strategies associated with bacterial infection:: Pathogenicity, epidemicity, and antibiotic resistance
JL Martínez et al.
CLINICAL MICROBIOLOGY REVIEWS (2002)
GeneChip® expression analysis of the iron starvation response in Pseudomonas aeruginosa:: identification of novel pyoverdine biosynthesis genes
UA Ochsner et al.
MOLECULAR MICROBIOLOGY (2002)
Biofilm formation and interaction with the surfaces of gallstones by Salmonella spp.
AM Prouty et al.
INFECTION AND IMMUNITY (2002)