4.5 Article

Combining molecular datasets with strongly heterogeneous taxon coverage enlightens the peculiar biogeographic history of stoneflies (Insecta: Plecoptera)

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Evolutionary Biology

Phylogenomics of the North American Plecoptera

Eric J. South et al.

Summary: Through transcriptome data analysis, a robust foundation for the North American Plecoptera species has been established, revealing previously unresolved or contested classification relationships.

SYSTEMATIC ENTOMOLOGY (2021)

Article Evolutionary Biology

The Pangean journey of 'south forestflies' (Insecta: Plecoptera) revealed by their first fossils

Yingying Cui et al.

JOURNAL OF SYSTEMATIC PALAEONTOLOGY (2019)

Article Biochemistry & Molecular Biology

Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error

Alexandros Vasilikopoulos et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Biochemistry & Molecular Biology

The phylogeny and evolutionary timescale of stoneflies (Insecta: Plecoptera) inferred from mitochondria' genomes

Shuangmei Ding et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Article Multidisciplinary Sciences

Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects

Benjamin Wipfler et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biology

An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea)

Dominic A. Evangelista et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)

Article Biochemistry & Molecular Biology

UFBoot2: Improving the Ultrafast Bootstrap Approximation

Diep Thi Hoang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemical Research Methods

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

Chao Zhang et al.

BMC BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

Phylogenomics, Diversification Dynamics, and Comparative Transcriptomics across the Spider Tree of Life

Rosa Fernandez et al.

CURRENT BIOLOGY (2018)

Article Virology

Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

Marc A. Suchard et al.

VIRUS EVOLUTION (2018)

Article Biochemical Research Methods

FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained exact optimization

Pranjal Vachaspati et al.

BIOINFORMATICS (2017)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Article Biochemistry & Molecular Biology

Evolutionary History of the Hymenoptera

Ralph S. Peters et al.

CURRENT BIOLOGY (2017)

Article Biochemical Research Methods

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes

Malte Petersen et al.

BMC BIOINFORMATICS (2017)

Article Biochemistry & Molecular Biology

A time-calibrated phylogeny of southern hemisphere stoneflies: Testing for Gondwanan origins

Graham A. McCulloch et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)

Article Evolutionary Biology

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

Olga Chernomor et al.

SYSTEMATIC BIOLOGY (2016)

Article Multidisciplinary Sciences

AMAS: a fast tool for alignment manipulation and computing of summary statistics

Marek L. Borowiec

Article Geosciences, Multidisciplinary

Global warming and the end-Permian extinction event: Proxy and modeling perspectives

Ying Cui et al.

EARTH-SCIENCE REVIEWS (2015)

Article Multidisciplinary Sciences

Comment on "Phylogenomics resolves the timing and pattern of insect evolution"

K. J. Tong et al.

SCIENCE (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Evolutionary Biology

The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters

Wayne P. Maddison et al.

SYSTEMATIC BIOLOGY (2015)

Article Biochemical Research Methods

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

Yinlong Xie et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

LUSt: a tool for approximated maximum likelihood supertree reconstruction

Wasiu A. Akanni et al.

BMC BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

BaCoCa - A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions

Patrick Kueck et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)

Article Multidisciplinary Sciences

Tectonic-driven climate change and the diversification of angiosperms

Anne-Claire Chaboureau et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Phylogenomics resolves the timing and pattern of insect evolution

Bernhard Misof et al.

SCIENCE (2014)

Article Ecology

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

Daniel L. Rabosky et al.

METHODS IN ECOLOGY AND EVOLUTION (2014)

Article Biochemical Research Methods

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees

Bernhard Misof et al.

BMC BIOINFORMATICS (2013)

Article Evolutionary Biology

Exploring power and parameter estimation of the BiSSE method for analyzing species diversification

Matthew P. Davis et al.

BMC EVOLUTIONARY BIOLOGY (2013)

Review Geosciences, Multidisciplinary

Two plates - Many subduction zones: The Variscan orogeny reconsidered

U. Kroner et al.

GONDWANA RESEARCH (2013)

Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Evolutionary Biology

Bayesian Analysis of Biogeography when the Number of Areas is Large

Michael J. Landis et al.

SYSTEMATIC BIOLOGY (2013)

Article Multidisciplinary Sciences

Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation

Daniel L. Rabosky et al.

NATURE COMMUNICATIONS (2013)

Article Evolutionary Biology

Insect Phylogenomics: Exploring the Source of Incongruence Using New Transcriptomic Data

Sabrina Simon et al.

GENOME BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates

Si Quang Le et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Ecology

phytools: an R package for phylogenetic comparative biology (and other things)

Liam J. Revell

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Evolutionary Biology

At last, a Pennsylvanian stem-stonefly (Plecoptera) discovered

Olivier Bethoux et al.

BMC EVOLUTIONARY BIOLOGY (2011)

Article Evolutionary Biology

Detecting the symplesiomorphy trap: a multigene phylogenetic analysis of terebelliform annelids

Min Zhong et al.

BMC EVOLUTIONARY BIOLOGY (2011)

Article Evolutionary Biology

Split-based computation of majority-rule supertrees

Anne Kupczok

BMC EVOLUTIONARY BIOLOGY (2011)

Article Biochemistry & Molecular Biology

FASconCAT: Convenient handling of data matrices

Patrick Kueck et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Biochemical Research Methods

Biopython: freely available Python tools for computational molecular biology and bioinformatics

Peter J. A. Cock et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Do insects lose flight before they lose their wings? Population genetic structure in subalpine stoneflies

Graham A. McCulloch et al.

MOLECULAR ECOLOGY (2009)

Review Entomology

Ancient rapid radiations of insects: Challenges for phylogenetic analysis

James B. Whitfield et al.

ANNUAL REVIEW OF ENTOMOLOGY (2008)

Review Ecology

Deciphering ancient rapid radiations

James B. Whitfield et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Article Evolutionary Biology

Inconsistency of phylogenetic estimates from concatenated data under coalescence

Laura Salter Kubatko et al.

SYSTEMATIC BIOLOGY (2007)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Timing and climatic consequences of the opening of Drake Passage

HD Scher et al.

SCIENCE (2006)

Article Biochemical Research Methods

Clann: investigating phylogenetic information through supertree analyses

CJ Creevey et al.

BIOINFORMATICS (2005)

Article Multidisciplinary Sciences

Molecular phylogenetic analysis of evolutionary trends in stonefly wing structure and locomotor behavior

MA Thomas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)