相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Lipid Interactions of a Ciliary Membrane TRP Channel: Simulation and Structural Studies of Polycystin-2
Qinrui Wang et al.
STRUCTURE (2020)
Structural insights into the gating mechanisms of TRPV channels
Ruth A. Pumroy et al.
CELL CALCIUM (2020)
Voltage-dependent structural models of the human Hv1 proton channel from long-timescale molecular dynamics simulations
Andrew D. Geragotelis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Scalable molecular dynamics on CPU and GPU architectures with NAMD
James C. Phillips et al.
JOURNAL OF CHEMICAL PHYSICS (2020)
Irritant-evoked activation and calcium modulation of the TRPA1 receptor
Jianhua Zhao et al.
NATURE (2020)
Structural insights into TRPM8 inhibition and desensitization
Melinda M. Diver et al.
SCIENCE (2019)
The role of π-helices in TRP channel gating
Lejla Zubcevic et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2019)
Mammalian TRP on channels are insensitive to membrane stretch
Yury A. Nikolaev et al.
JOURNAL OF CELL SCIENCE (2019)
Identification of Inhibitory Ca2+ Binding Sites in the Upper Vestibule of the Yeast Vacuolar TRP Channel
Mahnaz Amini et al.
ISCIENCE (2019)
Structure of the human TRPM4 ion channel in a lipid nanodisc
Henriette E. Autzen et al.
SCIENCE (2018)
Structure of the receptor-activated human TRPC6 and TRPC3 ion channels
Qinglin Tang et al.
CELL RESEARCH (2018)
In vitro and in vivo characterization of modulation of the vacuolar cation channel TRPY1 from Saccharomyces cerevisiae
Shin Hamamoto et al.
FEBS JOURNAL (2018)
Structural basis for the regulation of inositol trisphosphate receptors by Ca2+ and IP3
Navid Paknejad et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Structural basis of TRPV5 channel inhibition by econazole revealed by cryo-EM
Taylor E. T. Hughes et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Structural basis for the regulation of inositol trisphosphate receptors by Ca2+ and IP3
Navid Paknejad et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Structural basis of TRPV5 channel inhibition by econazole revealed by cryo-EM
Taylor E. T. Hughes et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2018)
Ion Permeation Mechanism in Epithelial Calcium Channel TRVP6
Serzhan Sakipov et al.
SCIENTIFIC REPORTS (2018)
Lipids and lipid domains of the yeast vacuole
Takuma Tsuji et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2018)
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Jasenko Zivanov et al.
ELIFE (2018)
Phosphatidylinositol-3-phosphate in the regulation of autophagy membrane dynamics
Anna Chiara Nascimbeni et al.
FEBS JOURNAL (2017)
Electron cryo-microscopy structure of the mechanotransduction channel NOMPC
Peng Jin et al.
NATURE (2017)
Electron cryo-microscopy structure of a human TRPM4 channel
Paige A. Winkler et al.
NATURE (2017)
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
Shawn Q. Zheng et al.
NATURE METHODS (2017)
High resolution single particle refinement in EMAN2.1
James M. Bell et al.
METHODS (2016)
TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action
Yuan Gao et al.
NATURE (2016)
CHARMM additive and polarizable force fields for biophysics and computer-aided drug design
K. Vanommeslaeghe et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2015)
Ankyrin Repeats Convey Force to Gate the NOMPC Mechanotransduction Channel
Wei Zhang et al.
CELL (2015)
CTFFIND4: Fast and accurate defocus estimation from electron micrographs
Alexis Rohou et al.
JOURNAL OF STRUCTURAL BIOLOGY (2015)
EMRinger: side chain directed model and map validation for 3D cryo-electron microscopy
Benjamin A. Barad et al.
NATURE METHODS (2015)
The Phyre2 web portal for protein modeling, prediction and analysis
Lawrence A. Kelley et al.
NATURE PROTOCOLS (2015)
I-TASSER server: new development for protein structure and function predictions
Jianyi Yang et al.
NUCLEIC ACIDS RESEARCH (2015)
The force-from-lipid (FFL) principle of mechanosensitivity, at large and in elements
Jinfeng Teng et al.
PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY (2015)
TRP Channels and Pain
David Julius
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 29 (2013)
Accurate and efficient integration for molecular dynamics simulations at constant temperature and pressure
Ross A. Lippert et al.
JOURNAL OF CHEMICAL PHYSICS (2013)
Drosophila NOMPC is a mechanotransduction channel subunit for gentle-touch sensation
Zhiqiang Yan et al.
NATURE (2013)
TRPV1 structures in distinct conformations reveal activation mechanisms
Erhu Cao et al.
NATURE (2013)
Constant electric field simulations of the membrane potential illustrated with simple systems
James Gumbart et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2012)
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
Sjors H. W. Scheres
JOURNAL OF STRUCTURAL BIOLOGY (2012)
Mechanism of Voltage Gating in Potassium Channels
Morten O. Jensen et al.
SCIENCE (2012)
The core domain as the force sensor of the yeast mechanosensitive TRP channel
Zhenwei Su et al.
JOURNAL OF GENERAL PHYSIOLOGY (2011)
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Properties of the intracellular transient receptor potential (TRP) channel in yeast, Yvc1
Yiming Chang et al.
FEBS LETTERS (2010)
I-TASSER: a unified platform for automated protein structure and function prediction
Ambrish Roy et al.
NATURE PROTOCOLS (2010)
electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation
Nigel W. Moriarty et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2009)
Calcium homeostasis and signaling in yeast cells and cardiac myocytes
Jiangjun Cui et al.
FEMS YEAST RESEARCH (2009)
Mechanical Force and Cytoplasmic Ca2+ Activate Yeast TRPY1 in Parallel
Zhenwei Su et al.
JOURNAL OF MEMBRANE BIOLOGY (2009)
Dynamical networks in tRNA: protein complexes
Anurag Sethi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Anton, a special-purpose machine for molecular dynamics simulation
David E. Shaw et al.
COMMUNICATIONS OF THE ACM (2008)
Structure of TRPV1 channel revealed by electron cryomicroscopy
Vera Y. Moiseenkova-Bell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Yeast gain-of-function mutations reveal structure-function relationships conserved among different subfamilies of transient receptor potential channels
Zhenwei Su et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Yeast screens show aromatic residues at the end of the sixth helix anchor transient receptor potential channel gate
Xinliang Zhou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Ion conduction through MscS as determined by electrophysiology and simulation
Marcos Sotomayor et al.
BIOPHYSICAL JOURNAL (2007)
Software news and updates - Carma: A molecular dynamics analysis program
Nicholas M. Glykos
JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)
A voltage-gated proton-selective channel lacking the pore domain
IS Ramsey et al.
NATURE (2006)
Scalable molecular dynamics with NAMD
JC Phillips et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
Imaging α-hemolysin with molecular dynamics:: Ionic conductance, osmotic permeability, and the electrostatic potential map
A Aksimentiev et al.
BIOPHYSICAL JOURNAL (2005)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
TJ Dolinsky et al.
NUCLEIC ACIDS RESEARCH (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
The transient receptor potential channel on the yeast vacuole is mechanosensitive
XL Zhou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
PHENIX:: building new software for automated crystallographic structure determination
PD Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2002)
A TRP homolog in Saccharomyces cerevisiae forms an intracellular Ca2+-permeable channel in the yeast vacuolar membrane
CP Palmer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Modeling of loops in protein structures
A Fiser et al.
PROTEIN SCIENCE (2000)