相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Ioanna Kalvari et al.
NUCLEIC ACIDS RESEARCH (2021)
Hierarchical, rotation-equivariant neural networks to select structural models of protein complexes
Stephan Eismann et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2021)
Improved protein structure prediction using potentials from deep learning
Andrew W. Senior et al.
NATURE (2020)
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
Zhichao Miao et al.
RNA (2020)
Evaluating DCA-based method performances for RNA contact prediction by a well-curated data set
Fabrizio Pucci et al.
RNA (2020)
Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures
Kalli Kappel et al.
NATURE METHODS (2020)
FARFAR2: Improved De Novo Rosetta Prediction of Complex Global RNA Folds
Andrew Martin Watkins et al.
STRUCTURE (2020)
End-to-End Differentiable Learning of Protein Structure
Mohammed AlQuraishi
CELL SYSTEMS (2019)
Crystal structure of an adenovirus virus-associated RNA
Iris V. Hood et al.
NATURE COMMUNICATIONS (2019)
Distance-based protein folding powered by deep learning
Jinbo Xu
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning
Frank Noe et al.
SCIENCE (2019)
Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions
Shuang Li et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
High-affinity recognition of specific tRNAs by an mRNA anticodon-binding groove
Krishna C. Suddala et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
Principles for targeting RNA with drug-like small molecules
Katherine Deigan Warner et al.
NATURE REVIEWS DRUG DISCOVERY (2018)
Tandem riboswitches form a natural Boolean logic gate to control purine metabolism in bacteria
Madeline E. Sherlock et al.
ELIFE (2018)
RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks
Jun Li et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution
Katrina M. Kutchko et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2017)
Protein-Ligand Scoring with Convolutional Neural Networks
Matthew Ragoza et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2017)
ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost
J. S. Smith et al.
CHEMICAL SCIENCE (2017)
SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction
Michal J. Boniecki et al.
NUCLEIC ACIDS RESEARCH (2016)
Structural Analysis of Adenovirus VAI RNA Defines the Mechanism of Inhibition of PKR
Katherine Launer-Felty et al.
BIOPHYSICAL JOURNAL (2015)
3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures
Jian Wang et al.
NUCLEIC ACIDS RESEARCH (2015)
T box riboswitches in Actinobacteria: Translational regulation via novel tRNA interactions
Anna V. Sherwood et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The purine riboswitch as a model system for exploring RNA biology and chemistry
Ely B. Porter et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2014)
The Noncoding RNA Revolution-Trashing Old Rules to Forge New Ones
Thomas R. Cech et al.
CELL (2014)
Direct Evaluation of tRNA Aminoacylation Status by the T-Box Riboswitch Using tRNA-mRNA Stacking and Steric Readout
Jinwei Zhang et al.
MOLECULAR CELL (2014)
Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era
Hetunandan Kamisetty et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
All-atom knowledge-based potential for RNA structure prediction and assessment
Emidio Capriotti et al.
BIOINFORMATICS (2011)
Protein 3D Structure Computed from Evolutionary Sequence Variation
Debora S. Marks et al.
PLOS ONE (2011)
PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta
Sidhartha Chaudhury et al.
BIOINFORMATICS (2010)
Atomic accuracy in predicting and designing noncanonical RNA structure
Rhiju Das et al.
NATURE METHODS (2010)
New metrics for comparing and assessing discrepancies between RNA 3D structures and models
Marc Parisien et al.
RNA (2009)
Automated de novo prediction of native-like RNA tertiary structures
Rhiju Das et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Generalized neural-network representation of high-dimensional potential-energy surfaces
Joerg Behler et al.
PHYSICAL REVIEW LETTERS (2007)
CONTRAfold: RNA secondary structure prediction without physics-based models
Chuong B. Do et al.
BIOINFORMATICS (2006)
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures
XJ Lu et al.
NUCLEIC ACIDS RESEARCH (2003)
Digital selection and analogue amplification coexist in a cortex-inspired silicon circuit
RHR Hahnloser et al.
NATURE (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
