4.5 Article

Biological and molecular characterization of two closely related carlaviruses affecting brassica plants

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Virology

RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets

Darren P. Martin et al.

Summary: The RDP project has developed an automated recombination analysis tool, RDP5, which is faster and more efficient than its predecessor, RDP4. Users can now analyze larger and more complex datasets with minimal manual intervention, allowing for greater flexibility and output options.

VIRUS EVOLUTION (2021)

Article Agronomy

Characterisation of turnip mosaic virus isolates reveals high genetic variability and occurrence of pathotype 1 in Brazil

Leilane Karam Rodrigues et al.

Summary: Turnip mosaic virus (TuMV) is a significant virus infecting brassicas, with Brazilian TuMV isolates showing high genetic variability originating from Europe, indicating their potential to cause damage in cultivated brassicas and other crops in Brazil.

EUROPEAN JOURNAL OF PLANT PATHOLOGY (2021)

Article Microbiology

Molecular Epidemiology of Citrus Leprosis Virus C: A New Viral Lineage and Phylodynamic of the Main Viral Subpopulations in the Americas

Camila Chabi-Jesus et al.

Summary: The study assessed the population and spatial dynamic parameters of citrus leprosis virus C from samples collected between 1932 and 2020. Three major lineages of the virus were identified with high nucleotide sequence identity of around 85% and signs of inter-clade recombination events. The high prevalence of CiLV-C in the Brazilian citrus belt is likely due to intensive connectivity between orchards, posing a potential risk for pathogen saturation in the region.

FRONTIERS IN MICROBIOLOGY (2021)

Article Biodiversity Conservation

An annotated list of plant viruses and viroids described in Brazil (1926-2018)

Elliot W. Kitajima

BIOTA NEOTROPICA (2020)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

NGPhylogeny.fr: new generation phylogenetic services for non-specialists

Frederic Lemoine et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Horticulture

Characterization of the Brazilian vegetable brassicas production chain

Raphael A. C. Melo et al.

HORTICULTURA BRASILEIRA (2019)

Article Plant Sciences

Cauliflower mosaic virus naturally infects wild radish (Raphanus raphanistrum) in Brazil

Leilane Karam Rodrigues et al.

AUSTRALASIAN PLANT DISEASE NOTES (2019)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

Jana Trifinopoulos et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

Enis Afgan et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Plant Sciences

Status and Prospects of Plant Virus Control Through Interference with Vector Transmission

C. Bragard et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 51 (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Primer3-new capabilities and interfaces

Andreas Untergasser et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

Noisy:: Identification of problematic columns in multiple sequence alignments

Andreas W. M. Dress et al.

ALGORITHMS FOR MOLECULAR BIOLOGY (2008)

Article Biochemical Research Methods

A degenerate primer allows amplification of part of the 3′-terminus of three distinct carlavirus species

J. O. Gaspar et al.

JOURNAL OF VIROLOGICAL METHODS (2008)

Article Virology

Changes to virus taxonomy 2004

MA Mayo

ARCHIVES OF VIROLOGY (2005)

Article Plant Sciences

Evidence supporting the recognition of Cole latent virus as a distinct carlavirus

P Belintani et al.

JOURNAL OF PHYTOPATHOLOGY (2002)