相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Gut microbiota and human NAFLD: disentangling microbial signatures from metabolic disorders
Judith Aron-Wisnewsky et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2020)
A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis
Tae Gyu Oh et al.
CELL METABOLISM (2020)
Distinct signatures of gut microbiome and metabolites associated with significant fibrosis in non-obese NAFLD
Giljae Lee et al.
NATURE COMMUNICATIONS (2020)
MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
Florian Plaza Onate et al.
BIOINFORMATICS (2019)
Emerging Role of the Gut Microbiome in Nonalcoholic Fatty Liver Disease: From Composition to Function
Suzanne R. Sharpton et al.
CLINICAL GASTROENTEROLOGY AND HEPATOLOGY (2019)
Hepatic gene expression in mouse models of non-alcoholic fatty liver disease after acute exercise
Anne-Christine Piguet et al.
HEPATOLOGY RESEARCH (2019)
Fatty Liver Disease Caused by High-Alcohol-Producing Klebsiella pneumoniae
Jing Yuan et al.
CELL METABOLISM (2019)
Serum bile acid patterns are associated with the presence of NAFLD in twins, and dose-dependent changes with increase in fibrosis stage in patients with biopsy-proven NAFLD
Cyrielle Caussy et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2019)
Suppressed hepatic bile acid signalling despite elevated production of primary and secondary bile acids in NAFLD
Na Jiao et al.
GUT (2018)
Global burden of NAFLD and NASH: trends, predictions, risk factors and prevention
Zobair Younossi et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2018)
Recent Insights into the Pathogenesis of Nonalcoholic Fatty Liver Disease
Juan Pablo Arab et al.
ANNUAL REVIEW OF PATHOLOGY: MECHANISMS OF DISEASE, VOL 13 (2018)
An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans
Adil Mardinoglu et al.
CELL METABOLISM (2018)
Link between gut-microbiome derived metabolite and shared gene-effects with hepatic steatosis and fibrosis in NAFLD
Cyrielle Caussy et al.
HEPATOLOGY (2018)
Molecular phenomics and metagenomics of hepatic steatosis in non-diabetic obese women
Lesley Hoyles et al.
NATURE MEDICINE (2018)
Best practices for analysing microbiomes
Rob Knight et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Gut microbiome may contribute to insulin resistance and systemic inflammation in obese rodents: a meta-analysis
Na Jiao et al.
PHYSIOLOGICAL GENOMICS (2018)
Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes
Liping Zhao et al.
SCIENCE (2018)
Gut microbiome, microbial metabolites and the development of NAFLD
Cyrielle Caussy et al.
NATURE REVIEWS GASTROENTEROLOGY & HEPATOLOGY (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
The therapeutic landscape of non-alcoholic steatohepatitis
Hugo Perazzo et al.
LIVER INTERNATIONAL (2017)
Sequencing the Gut Metagenome as a Noninvasive Diagnosis for Advanced Nonalcoholic Steatohepatitis
Lixin Zhu et al.
HEPATOLOGY (2017)
Gut microbiome diversity and high-fibre intake are related to lower long-term weight gain
C. Menni et al.
INTERNATIONAL JOURNAL OF OBESITY (2017)
Strains, functions and dynamics in the expanded Human Microbiome Project
Jason Lloyd-Price et al.
NATURE (2017)
Experimental design and quantitative analysis of microbial community multiomics
Himel Mallick et al.
GENOME BIOLOGY (2017)
Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease
Rohit Loomba et al.
CELL METABOLISM (2017)
The story of HCC in NAFLD: from epidemiology, across pathogenesis, to prevention and treatment
Cristina Margini et al.
LIVER INTERNATIONAL (2016)
The Severity of Nonalcoholic Fatty Liver Disease Is Associated With Gut Dysbiosis and Shift in the Metabolic Function of the Gut Microbiota
Jerome Boursier et al.
HEPATOLOGY (2016)
Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
Edoardo Pasolli et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Bile Acids and Dysbiosis in Non-Alcoholic Fatty Liver Disease
Marialena Mouzaki et al.
PLOS ONE (2016)
Consequences of bile salt biotransformations by intestinal bacteria
Jason M. Ridlon et al.
GUT MICROBES (2016)
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Dinghua Li et al.
BIOINFORMATICS (2015)
Altered Bile Acid Metabolome in Patients with Nonalcoholic Steatohepatitis
Brian C. Ferslew et al.
DIGESTIVE DISEASES AND SCIENCES (2015)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy
Guanghong Zuo et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
Dietary Modulation of Gut Microbiota Contributes to Alleviation of Both Genetic and Simple Obesity in Children
Chenhong Zhang et al.
EBIOMEDICINE (2015)
Dietary effects on human gut microbiome diversity
Zhenjiang Xu et al.
BRITISH JOURNAL OF NUTRITION (2015)
Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains
Stephen J. Salipante et al.
GENOME RESEARCH (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Altered gut microbial energy and metabolism in children with non-alcoholic fatty liver disease
Sonia Michail et al.
FEMS MICROBIOLOGY ECOLOGY (2015)
Potential of fecal microbiota for early-stage detection of colorectal cancer
Georg Zeller et al.
MOLECULAR SYSTEMS BIOLOGY (2014)
Characterization of Gut Microbiomes in Nonalcoholic Steatohepatitis (NASH) Patients: A Connection Between Endogenous Alcohol and NASH
Lixin Zhu et al.
HEPATOLOGY (2013)
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
Rolf S. Kaas et al.
BMC GENOMICS (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
IMG: the integrated microbial genomes database and comparative analysis system
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Hidden Markov model speed heuristic and iterative HMM search procedure
L. Steven Johnson et al.
BMC BIOINFORMATICS (2010)
Evolution of Inflammation in Nonalcoholic Fatty Liver Disease: The Multiple Parallel Hits Hypothesis
Herbert Tilg et al.
HEPATOLOGY (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
Ab initio gene identification in metagenomic sequences
Wenhan Zhu et al.
NUCLEIC ACIDS RESEARCH (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)