相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Next-Generation Sequencing of Infectious Pathogens
Marta Gwinn et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2019)
The importance of public health genomics for ensuring health security for Australia
Deborah A. Williamson et al.
MEDICAL JOURNAL OF AUSTRALIA (2019)
Practical Guidance to Implementing Quality Management Systems in Public Health Laboratories Performing Next-Generation Sequencing: Personnel, Equipment, and Process Management (Phase 1)
Rebecca J. Hutchins et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2019)
Evaluation of Rapid Library Preparation Protocols for Whole Genome Sequencing Based Outbreak Investigation
Helena M. B. Seth-Smith et al.
FRONTIERS IN PUBLIC HEALTH (2019)
Snakemake-a scalable bioinformatics workflow engine (vol 28, pg 2520, 2012)
Johannes Koster et al.
BIOINFORMATICS (2018)
A primer on microbial bioinformatics for nonbioinformaticians
J. A. Carrico et al.
CLINICAL MICROBIOLOGY AND INFECTION (2018)
Bead-linked transposomes enable a normalization-free workflow for NGS library preparation
Stephen Bruinsma et al.
BMC GENOMICS (2018)
Evaluation of Quality Assessment Protocols for High Throughput Genome Resequencing Data
Matteo Chiara et al.
Frontiers in Genetics (2017)
Singularity: Scientific containers for mobility of compute
Gregory M. Kurtzer et al.
PLOS ONE (2017)
Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database
Marc W. Allard et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies
Catherine E. Yoshida et al.
PLOS ONE (2016)
Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis
Andrea D. Tyler et al.
PLOS ONE (2016)
Mash: fast genome and metagenome distance estimation using MinHash
Brian D. Ondov et al.
GENOME BIOLOGY (2016)
Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities
Jacob Moran-Gilad et al.
BMC INFECTIOUS DISEASES (2015)
Good laboratory practice for clinical next-generation sequencing informatics pipelines
Amy S. Gargis et al.
NATURE BIOTECHNOLOGY (2015)
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
Nathan D. Olson et al.
FRONTIERS IN GENETICS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Library construction for next-generation sequencing: Overviews and challenges
Steven R. Head et al.
BIOTECHNIQUES (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
WGS Analysis and Interpretation in Clinical and Public Health Microbiology Laboratories: What Are the Requirements and How Do Existing Tools Compare?
Kelly L. Wyres et al.
PATHOGENS (2014)
Current Landscape and New Paradigms of Proficiency Testing and External Quality Assessment for Molecular Genetics
Lisa V. Kalman et al.
ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE (2013)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
A Genomic Day in the Life of a Clinical Microbiology Laboratory
S. Wesley Long et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Transforming clinical microbiology with bacterial genome sequencing
Xavier Didelot et al.
NATURE REVIEWS GENETICS (2012)