相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Single-molecule tracking of transcription protein dynamics in living cells: seeing is believing, but what are we seeing?
Timothee Lionnet et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2021)
Structural basis of nucleosome transcription mediated by Chd1 and FACT
Lucas Farnung et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2021)
Spatiotemporal coordination of transcription preinitiation complex assembly in live cells
Vu Q. Nguyen et al.
MOLECULAR CELL (2021)
Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin
Jee Min Kim et al.
ELIFE (2021)
FACT caught in the act of manipulating the nucleosome
Yang Liu et al.
NATURE (2020)
The Chaperone FACT and Histone H2B Ubiquitination Maintain S. pombe Genome Architecture through Genic and Subtelomeric Functions
Magdalena Murawska et al.
MOLECULAR CELL (2020)
Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction
Anand Ranjan et al.
ELIFE (2020)
The role of FACT in managing chromatin: disruption, assembly, or repair?
Tim Formosa et al.
NUCLEIC ACIDS RESEARCH (2020)
Structural insight into nucleosome transcription by RNA polymerase II with elongation factors
Haruhiko Ehara et al.
SCIENCE (2019)
A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing
Theophilus T. Tettey et al.
CELL REPORTS (2019)
Histone Recycling by FACT and Spt6 during Transcription Prevents the Scrambling of Histone Modifications
Celia Jeronimo et al.
CELL REPORTS (2019)
Rational Design of Fluorogenic and Spontaneously Blinking Labels for Super-Resolution Imaging
Qinsi Zheng et al.
ACS CENTRAL SCIENCE (2019)
RNA Polymerase II CTD Tyrosine 1 Is Required for Efficient Termination by the Nrd1-Nab3-Sen1 Pathway
Pierre Collin et al.
MOLECULAR CELL (2019)
The UCSC Genome Browser database: 2018 update
Jonathan Casper et al.
NUCLEIC ACIDS RESEARCH (2018)
Role of Chromatin Damage and Chromatin Trapping of FACT in Mediating the Anticancer Cytotoxicity of DNA-Binding Small-Molecule Drugs
Elimelech Nesher et al.
CANCER RESEARCH (2018)
Acetylation-Dependent Recruitment of the FACT Complex and Its Role in Regulating Pol II Occupancy Genome-Wide in Saccharomyces cerevisiae
Rakesh Pathak et al.
GENETICS (2018)
Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock
Vinesh Vinayachandran et al.
GENOME RESEARCH (2018)
Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization
Laura L. McCullough et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2018)
Simplified ChIP-exo assays
Matthew J. Rossi et al.
NATURE COMMUNICATIONS (2018)
Live-cell single-molecule dynamics of PcG proteins imposed by the DIPG H3.3K27M mutation
Roubina Tatavosian et al.
NATURE COMMUNICATIONS (2018)
Robust model-based analysis of single-particle tracking experiments with Spot-On
Anders S Hansen et al.
eLife (2018)
Acetylation-Dependent Recruitment of the FACT Complex and Its Role in Regulating Pol II Occupancy Genome-Wide in Saccharomyces cerevisiae
Rakesh Pathak et al.
GENETICS (2018)
Unification of Protein Abundance Datasets Yields a Quantitative Saccharomyces cerevisiae Proteome
Brandon Ho et al.
CELL SYSTEMS (2018)
Structure and function of the histone chaperone FACT - Resolving FACTual issues
Katerina Gurova et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2018)
Structural basis of the nucleosome transition during RNA polymerase II passage
Tomoya Kujirai et al.
SCIENCE (2018)
Structure of transcribing RNA polymerase II-nucleosome complex
Lucas Farnung et al.
NATURE COMMUNICATIONS (2018)
Transcription Promotes the Interaction of the FAcilitates Chromatin Transactions (FACT) Complex with Nucleosomes in Saccharomyces cerevisiae
Benjamin J. E. Martin et al.
GENETICS (2018)
The histone chaperone FACT modulates nucleosome structure by tethering its components
Tao Wang et al.
LIFE SCIENCE ALLIANCE (2018)
Precise genome-wide mapping of single nucleosomes and linkers in vivo
Razvan V. Chereji et al.
GENOME BIOLOGY (2018)
An mRNA Capping Enzyme Targets FACT to the Active Gene To Enhance the Engagement of RNA Polymerase II into Transcriptional Elongation
Rwik Sen et al.
MOLECULAR AND CELLULAR BIOLOGY (2017)
Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates
Srinivas Ramachandran et al.
MOLECULAR CELL (2017)
Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation
Ameet Shetty et al.
MOLECULAR CELL (2017)
Nucleosome-Chd1 structure and implications for chromatin remodelling
Lucas Farnung et al.
NATURE (2017)
Understanding nucleosome dynamics and their links to gene expression and DNA replication
William K. M. Lai et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)
The elongation factor Spt4/5 regulates RNA polymerase II transcription through the nucleosome
John B. Crickard et al.
NUCLEIC ACIDS RESEARCH (2017)
Live-cell p53 single-molecule binding is modulated by C-terminal acetylation and correlates with transcriptional activity
Alessia Loffreda et al.
NATURE COMMUNICATIONS (2017)
A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription
Matthew A. Sdano et al.
ELIFE (2017)
CTCF and cohesin regulate chromatin loop stability with distinct dynamics
Anders S. Hansen et al.
ELIFE (2017)
TDP-43 Promotes Neurodegeneration by Impairing Chromatin Remodeling
Amit Berson et al.
CURRENT BIOLOGY (2017)
Integrated molecular mechanism directing nucleosome reorganization by human FACT
Yasuo Tsunaka et al.
GENES & DEVELOPMENT (2016)
A Comprehensive Toolbox for Genome Editing in Cultured Drosophila melanogaster Cells
Stefan Kunzelmann et al.
G3-GENES GENOMES GENETICS (2016)
The Abundant Histone Chaperones Spt6 and FACT Collaborate to Assemble, Inspect, and Maintain Chromatin Structure in Saccharomyces cerevisiae
Laura McCullough et al.
GENETICS (2015)
The Histone Chaperones FACT and Spt6 Restrict H2A.Z from Intragenic Locations
Celia Jeronimo et al.
MOLECULAR CELL (2015)
Simultaneous measurement of genome-wide transcription elongation speeds and rates of RNA polymerase II transition into active elongation with 4sUDRB-seq
Gilad Fuchs et al.
NATURE PROTOCOLS (2015)
Histone exchange, chromatin structure and the regulation of transcription
Swaminathan Venkatesh et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
New vectors for simple and streamlined CRISPR-Cas9 genome editing in Saccharomyces cerevisiae
Marian F. Laughery et al.
YEAST (2015)
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
Jiji Chen et al.
CELL (2014)
TFIIH Phosphorylation of the Pol II CTD Stimulates Mediator Dissociation from the Preinitiation Complex and Promoter Escape
Koon Ho Wong et al.
MOLECULAR CELL (2014)
Glutamine methylation in histone H2A is an RNA-polymerase-I-dedicated modification
Peter Tessarz et al.
NATURE (2014)
Kin28 regulates the transient association of Mediator with core promoters
Celia Jeronimo et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
VAP: a versatile aggregate profiler for efficient genome-wide data representation and discovery
Charles Coulombe et al.
NUCLEIC ACIDS RESEARCH (2014)
Efficient chromosomal gene modification with CRISPR/cas9 and PCR-based homologous recombination donors in cultured Drosophila cells
Romy Boettcher et al.
NUCLEIC ACIDS RESEARCH (2014)
Transcribing through the nucleosome
Sheila S. Teves et al.
TRENDS IN BIOCHEMICAL SCIENCES (2014)
Tri-track: Free Software for Large-Scale Particle Tracking
Pascal Vallotton et al.
MICROSCOPY AND MICROANALYSIS (2013)
Extensive transcriptional heterogeneity revealed by isoform profiling
Vicent Pelechano et al.
NATURE (2013)
Single-molecule imaging of transcription factor binding to DNA in live mammalian cells
J. Christof M. Gebhardt et al.
NATURE METHODS (2013)
Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription
Silvia Carvalho et al.
NUCLEIC ACIDS RESEARCH (2013)
Eukaryotic Replisome Components Cooperate to Process Histones During Chromosome Replication
Magdalena Foltman et al.
CELL REPORTS (2013)
The role of FACT in making and breaking nucleosomes
Tim Formosa
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2012)
A Universal RNA Polymerase II CTD Cycle Is Orchestrated by Complex Interplays between Kinase, Phosphatase, and Isomerase Enzymes along Genes
Alain R. Bataille et al.
MOLECULAR CELL (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Nascent transcript sequencing visualizes transcription at nucleotide resolution
L. Stirling Churchman et al.
NATURE (2011)
Epigenome characterization at single base-pair resolution
Jorja G. Henikoff et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II
So Hee Kwon et al.
GENES & DEVELOPMENT (2010)
Ubiquitylation of FACT by the Cullin-E3 ligase Rtt101 connects FACT to DNA replication
Junhong Han et al.
GENES & DEVELOPMENT (2010)
Phosphorylated Pol II CTD Recruits Multiple HDACs, Including Rpd3C(S), for Methylation-Dependent Deacetylation of ORF Nucleosomes
Chhabi K. Govind et al.
MOLECULAR CELL (2010)
A Complete Set of Nascent Transcription Rates for Yeast Genes
Vicent Pelechano et al.
PLOS ONE (2010)
DSIF and RNA Polymerase II CTD Phosphorylation Coordinate the Recruitment of Rpd3S to Actively Transcribed Genes
Simon Drouin et al.
PLOS GENETICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
FACT facilitates chromatin transcription by RNA polymerases I and III
Joanna L. Birch et al.
EMBO JOURNAL (2009)
Mapping the local protein interactome of the NuA3 histone acetyltransferase
Sherri K. Smart et al.
PROTEIN SCIENCE (2009)
A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
Cizhong Jiang et al.
GENOME BIOLOGY (2009)
HatoTag: A novel protein labeling technology for cell imaging and protein analysis
Georgyi V. Los et al.
ACS CHEMICAL BIOLOGY (2008)
H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation
Alastair B. Fleming et al.
MOLECULAR CELL (2008)
The anchor-away technique: Rapid, conditional establishment of yeast mutant phenotypes
Hirohito Haruki et al.
MOLECULAR CELL (2008)
Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome
Vanessa Cheung et al.
PLOS BIOLOGY (2008)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan et al.
NATURE (2006)
Drosophila Paf1 modulates chromatin structure at actively transcribed genes
K Adelman et al.
MOLECULAR AND CELLULAR BIOLOGY (2006)
Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning
B Guillemette et al.
PLOS BIOLOGY (2005)
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
MJ Carrozza et al.
CELL (2005)
Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo
PB Mason et al.
MOLECULAR CELL (2005)
Two cyclin-dependent kinases promote RNA polymerase II transcription and formation of the scaffold complex
Y Liu et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
High-definition macromolecular composition of yeast RNA-processing complexes
NJ Krogan et al.
MOLECULAR CELL (2004)
A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes
C Janke et al.
YEAST (2004)
Evidence for eviction and rapid deposition of histories upon transcriptional elongation by RNA polymerase II
MA Schwabish et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Java Treeview-extensible visualization of microarray data
AJ Saldanha
BIOINFORMATICS (2004)
Multiple Nhp6 molecules are required to recruit Spt16-Pob3 to form yFACT complexes and to reorganize nucleosomes
S Ruone et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
NJ Krogan et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes
R Simic et al.
EMBO JOURNAL (2003)
Regulation of TATA-binding protein binding by the SAGA complex and the Nhp6 high-mobility group protein
YX Yu et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins
DL Lindstrom et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo
PB Mason et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
RNA polymerase II elongation factors of Saccharomyces cerevisiae:: a targeted proteomnics approach
NJ Krogan et al.
MOLECULAR AND CELLULAR BIOLOGY (2002)
TREX is a conserved complex coupling transcription with messenger RNA export
K Strässer et al.
NATURE (2002)
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
Jo Vandesompele et al.
GENOME BIOLOGY (2002)
Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN
T Formosa et al.
EMBO JOURNAL (2001)
Genome-wide location and function of DNA binding proteins
B Ren et al.
SCIENCE (2000)
The essential interaction between yeast mRNA capping enzyme subunits is not required for triphosphatase function in vivo
Y Takase et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)