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FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Magali Hennion et al.
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Olivier Ganier et al.
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Morgane Macheret et al.
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Francesco De Carli et al.
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Spatio-temporal re-organization of replication foci accompanies replication domain consolidation during human pluripotent stem cell lineage specification
Korey A. Wilson et al.
CELL CYCLE (2016)
deepTools2: a next generation web server for deep-sequencing data analysis
Fidel Ramirez et al.
NUCLEIC ACIDS RESEARCH (2016)
Selectivity of ORC binding sites and the relation to replication timing, fragile sites, and deletions in cancers
Benoit Miotto et al.
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4D Visualization of replication foci in mammalian cells corresponding to individual replicons
V. O. Chagin et al.
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Replication landscape of the human genome
Nataliya Petryk et al.
NATURE COMMUNICATIONS (2016)
3D replicon distributions arise from stochastic initiation and domino-like DNA replication progression
D. Loeb et al.
NATURE COMMUNICATIONS (2016)
Molecular Combing of Single DNA Molecules on the 10 Megabase Scale
Atanas Kaykov et al.
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Spatiotemporal coupling and decoupling of gene transcription with DNA replication origins during embryogenesis in C-elegans
Ehsan Pourkarimi et al.
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Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins
Michael S. Foulk et al.
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Christelle Cayrou et al.
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The spatial and temporal organization of origin firing during the S-phase of fission yeast
Atanas Kaykov et al.
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Olivier Hyrien
JOURNAL OF CELL BIOLOGY (2015)
Alkene-Tetrazine Ligation for Imaging Cellular DNA
Ulrike Rieder et al.
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An Azide-Modified Nucleoside for Metabolic Labeling of DNA
Anne B. Neef et al.
CHEMBIOCHEM (2014)
G4 motifs affect origin positioning and efficiency in two vertebrate replicators
Anne-Laure Valton et al.
EMBO JOURNAL (2014)
A chromatin structure-based model accurately predicts DNA replication timing in human cells
Yevgeniy Gindin et al.
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The Spatiotemporal Program of DNA Replication Is Associated with Specific Combinations of Chromatin Marks in Human Cells
Franck Picard et al.
PLOS GENETICS (2014)
Replicon: a software to accurately predict DNA replication timing in metazoan cells
Yevgeniy Gindin et al.
FRONTIERS IN GENETICS (2014)
Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing
Gaetano Ivan Dellino et al.
GENOME RESEARCH (2013)
Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins
Larry D. Mesner et al.
GENOME RESEARCH (2013)
Replication Dynamics: Biases and Robustness of DNA Fiber Analysis
Herve Techer et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
Quantitative, Genome-Wide Analysis of Eukaryotic Replication Initiation and Termination
Sean R. McGuffee et al.
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An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
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Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
Ernest T. Lam et al.
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ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
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Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs
Emilie Besnard et al.
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Replication timing and its emergence from stochastic processes
John Bechhoefer et al.
TRENDS IN GENETICS (2012)
Regulation of DNA Replication within the Immunoglobulin Heavy-Chain Locus During B Cell Commitment
Agnieszka Demczuk et al.
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Genome-wide identification and characterization of replication origins by deep sequencing
Jia Xu et al.
GENOME BIOLOGY (2012)
pROC: an open-source package for R and S plus to analyze and compare ROC curves
Xavier Robin et al.
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Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
Christelle Cayrou et al.
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Replication-Associated Mutational Asymmetry in the Human Genome
Chun-Long Chen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Integrative genomics viewer
James T. Robinson et al.
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Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone
Yoav Lubelsky et al.
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Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome
Guillaume Guilbaud et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Eukaryotic Chromosome DNA Replication: Where, When and How?
Hisao Masai et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79 (2010)
Reconciling stochastic origin firing with defined replication timing
Nicholas Rhind et al.
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Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes
Chun-Long Chen et al.
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Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing
Scott Cheng-Hsin Yang et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Mathematical modelling of whole chromosome replication
Alessandro P. S. de Moura et al.
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Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
R. Scott Hansen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Universal Temporal Profile of Replication Origin Activation in Eukaryotes
Arach Goldar et al.
PLOS ONE (2009)
A revisionist replicon model for higher eukaryotic genomes
J. L. Hamlin et al.
JOURNAL OF CELLULAR BIOCHEMISTRY (2008)
DNA combing reveals intrinsic temporal disorder in the replication of yeast chromosome VI
Daniel M. Czajkowsky et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
How Xenopus laevis embryos replicate reliably: Investigating the random-completion problem
Scott Cheng-Hsin Yang et al.
PHYSICAL REVIEW E (2008)
Replication fork velocities at adjacent replication origins are coordinately modified during DNA replication in human cells
Chiara Conti et al.
MOLECULAR BIOLOGY OF THE CELL (2007)
DNA replication origin interference increases the spacing between initiation events in human cells
Ronald Lebofsky et al.
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DNA replication origins fire stochastically in fission yeast
PK Patel et al.
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Spatio-temporal organization of DNA replication in murine embryonic stem, primary, and immortalized cells
MM Panning et al.
JOURNAL OF CELLULAR BIOCHEMISTRY (2005)
Control of replication origin density and firing time in Xenopus egg extracts -: Role of a caffeine-sensitive, ATR-dependent checkpoint
K Marheineke et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Dynamics of DNA replication in mammalian somatic cells: Nucleotide pool modulates origin choice and interorigin spacing
M Anglana et al.
CELL (2003)
Sequence-independent DNA binding and replication initiation by the human origin recognition complex
S Vashee et al.
GENES & DEVELOPMENT (2003)
The dihydrofolate reductase origin of replication does not contain any nonredundant genetic elements required for origin activity
LD Mesner et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
The origin recognition complex marks a replication origin in the human TOP1 gene promoter
C Keller et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Initiation sites are distributed at frequent intervals in the Chinese hamster dihydrofolate reductase origin of replication but are used with very different efficiencies
PA Dijkwel et al.
MOLECULAR AND CELLULAR BIOLOGY (2002)
Visualization of DNA replication on individual Epstein-Barr virus episomes
P Norio et al.
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Activation of mammalian Chk1 during DNA replication arrest: a role for Chk1 in the intra-S phase checkpoint monitoring replication origin firing
C Feijoo et al.
JOURNAL OF CELL BIOLOGY (2001)
Replication origins in Xenopus egg extract are 5-15 kilobases apart and are activated in clusters that fire at different times
JJ Blow et al.
JOURNAL OF CELL BIOLOGY (2001)
Start sites of bidirectional DNA synthesis at the human lamin B2 origin
G Abdurashidova et al.
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Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci
R Berezney et al.
CHROMOSOMA (2000)