4.2 Article

mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

Walking the line: mechanisms underlying directional mRNA transport and localisation in neurons and beyond

Reem Abouward et al.

Summary: Localisation of mRNA plays a crucial role in establishing and maintaining cellular polarity, synaptic plasticity, and other biological processes. Recent discoveries regarding RNA hitchhiking on cytoplasmic organelles have significant implications on our understanding of neuronal function in development, adulthood, and neurodegeneration. The mechanisms controlling mRNA localisation are largely conserved across evolution and have been extensively studied in various biological models.

CELLULAR AND MOLECULAR LIFE SCIENCES (2021)

Review Neurosciences

The functional organization of axonal mRNA transport and translation

Irene Dalla Costa et al.

Summary: Recent publications have revealed new mechanisms for regulating axonal transport and localized translation of mRNA, converging on RNA regulons that drive various axonal functions. These different regulatory pathways act as organizing platforms to modulate the axon's proteome to meet its physiological needs.

NATURE REVIEWS NEUROSCIENCE (2021)

Article Multidisciplinary Sciences

Interactions between nascent proteins translated by adjacent ribosomes drive homomer assembly

Matilde Bertolini et al.

Summary: This study investigated whether newly synthesized proteins can form functional oligomers through co-co assembly. They found that this mechanism can lead to the co-assembly of hundreds of homomeric subunits in human cells, mainly mediated by N-terminal coiled coils among five major domain classes.

SCIENCE (2021)

Article Multidisciplinary Sciences

SARS-CoV-2 nucleocapsid protein phase separates with G3BPs to disassemble stress granules and facilitate viral production

Lingling Luo et al.

Summary: Understanding how SARS-CoV-2 disrupts stress granules (SGs) through interaction with the nucleocapsid (N) protein sheds light on the virus' ability to evade host antiviral defenses. This interaction plays a crucial role in viral production, highlighting the importance of studying these mechanisms in combatting COVID-19.

SCIENCE BULLETIN (2021)

Article Multidisciplinary Sciences

Core Fermentation (CoFe) granules focus coordinated glycolytic mRNA localization and translation to fuel glucose fermentation

Fabian Morales-Polanco et al.

Summary: Studies have shown that glycolytic mRNAs are localized to granules for active translation, which is critical for their localization and likely facilitates higher level organization and control of the glycolytic pathway. These granules, termed core fermentation (CoFe) granules, seem to function as translation factories for high-level coordinated enzyme synthesis necessary for a critical metabolic pathway.

ISCIENCE (2021)

Article Multidisciplinary Sciences

A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport

Adham Safieddine et al.

Summary: Using high-throughput single molecule FISH screening, researchers found that 8 human mRNAs localize to centrosomes with unique cell cycle dependent patterns using an active polysome targeting mechanism.

NATURE COMMUNICATIONS (2021)

Article Cell Biology

Cytoplasmic cleavage of IMPA1 3′ UTR is necessary for maintaining axon integrity

Catia Andreassi et al.

Summary: The 3' untranslated regions (3' UTRs) of mRNA play essential roles in mRNA metabolism, with incorrect processing potentially leading to developmental defects and neurological disorders. Deep sequencing revealed cleavage of 3' UTRs in transcripts in sympathetic neuron axons, generating translatable isoforms crucial for axon integrity. This study provides insights into mRNA metabolism that regulates local protein synthesis and generates a new class of 3' UTR-derived RNAs.

CELL REPORTS (2021)

Article Biology

In vivo reconstitution finds multivalent RNA-RNA interactions as drivers of meshlike condensates

Weirui Ma et al.

Summary: Liquid-like condensates in cells are not necessarily sphere-like, as various condensates with filamentous morphology have been observed. One example is the TIS granule network, which shares a large surface area with the rough endoplasmic reticulum and plays a crucial role in membrane protein trafficking. Reconstitution experiments have shown that a multivalent RNA-binding protein and RNAs with large unstructured regions can form a pervasive intermolecular interaction network that acts as a condensate skeleton.
Article Cell Biology

The ribosome collision sensor Hel2 functions as preventive quality control in the secretory pathway

Yoshitaka Matsuo et al.

Summary: The study finds that Hel2 preferentially binds to pre-engaged secretory ribosome-nascent chain complexes, especially under signal recognition particle (SRP) deficient conditions. Deletion of Hel2 exacerbates mitochondrial defects caused by insufficient SRP, leading to mistargeting of secretory proteins into mitochondria. These insights shed light on risk management in the secretory pathway for maintaining cellular protein homeostasis.

CELL REPORTS (2021)

Article Biochemistry & Molecular Biology

Functional Cyclization of Eukaryotic mRNAs

Olga M. Alekhina et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Biochemistry & Molecular Biology

RNase L promotes the formation of unique ribonucleoprotein granules distinct from stress granules

James M. Burke et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2020)

Article Cell Biology

Genome-wide Survey of Ribosome Collision

Peixun Han et al.

CELL REPORTS (2020)

Article Multidisciplinary Sciences

A reconstituted mammalian APC-kinesin complex selectively transports defined packages of axonal mRNAs

Sebastian Baumann et al.

SCIENCE ADVANCES (2020)

Review Endocrinology & Metabolism

Mitochondrial-derived peptides in energy metabolism

Troy L. Merry et al.

AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2020)

Review Neurosciences

Local mRNA translation in long-term maintenance of axon health and function

Eunjin Kim et al.

CURRENT OPINION IN NEUROBIOLOGY (2020)

Article Biochemistry & Molecular Biology

RNA-GPS Predicts SARS-CoV-2 RNA Residency to Host Mitochondria and Nucleolus

Kevin E. Wu et al.

CELL SYSTEMS (2020)

Article Multidisciplinary Sciences

CReP mediates selective translation initiation at the endoplasmic reticulum

Jonathan P. Kastan et al.

SCIENCE ADVANCES (2020)

Article Cell Biology

mRNA localization mediates maturation of cytoplasmic cilia in Drosophila spermatogenesis

Jaclyn M. Fingerhut et al.

JOURNAL OF CELL BIOLOGY (2020)

Article Biochemistry & Molecular Biology

An In Vitro Assembly System Identifies Roles for RNA Nucleation and ATP in Yeast Stress Granule Formation

Kyle Begovich et al.

MOLECULAR CELL (2020)

Article Biochemistry & Molecular Biology

RNAlocalization and co-translational interactions controlRAB13GTPase function and cell migration

Konstadinos Moissoglu et al.

EMBO JOURNAL (2020)

Article Biochemistry & Molecular Biology

Single-Molecule Imaging Reveals Translation of mRNAs Localized to Stress Granules

Daniel Mateju et al.

Article Biochemistry & Molecular Biology

SARS-CoV-2 nucleocapsid protein phase-separates with RNA and with human hnRNPs

Theodora Myrto Perdikari et al.

EMBO JOURNAL (2020)

Article Multidisciplinary Sciences

A ribosome-associated chaperone enables substrate triage in a cotranslational protein targeting complex

Hao-Hsuan Hsieh et al.

NATURE COMMUNICATIONS (2020)

Article Multidisciplinary Sciences

Nucleocapsid protein of SARS-CoV-2 phase separates into RNA-rich polymerase-containing condensates

Adriana Savastano et al.

NATURE COMMUNICATIONS (2020)

Article Cell Biology

Subcellular mRNA Localization Regulates Ribosome Biogenesis in Migrating Cells

Maria Dermit et al.

DEVELOPMENTAL CELL (2020)

Review Cell Biology

Endoplasmic reticulum: a focal point of Zika virus infection

Muhammad Izzuddin Mohd Ropidi et al.

JOURNAL OF BIOMEDICAL SCIENCE (2020)

Review Biochemistry & Molecular Biology

The Emerging Role of ncRNAs and RNA-Binding Proteins in Mitotic Apparatus Formation

Kei K. Ito et al.

NON-CODING RNA (2020)

Review Biochemistry & Molecular Biology

Organelle zones in mitochondria

Shigeomi Shimizu

JOURNAL OF BIOCHEMISTRY (2019)

Article Cell Biology

Translation factor mRNA granules direct protein synthetic capacity to regions of polarized growth

Mariavittoria Pizzinga et al.

JOURNAL OF CELL BIOLOGY (2019)

Article Multidisciplinary Sciences

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH

Chee-Huat Linus Eng et al.

NATURE (2019)

Article Biochemistry & Molecular Biology

Co-translational assembly of proteasome subunits in NOT1-containing assemblysomes

Olesya O. Panasenko et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)

Review Biochemistry & Molecular Biology

Transport of Proteins into Mitochondria

Katja G. Hansen et al.

PROTEIN JOURNAL (2019)

Review Biochemistry & Molecular Biology

Does functional specialization of ribosomes really exist?

Max B. Ferretti et al.

Review Biochemistry & Molecular Biology

Ribosome Stoichiometry: From Form to Function

Edward Emmott et al.

TRENDS IN BIOCHEMICAL SCIENCES (2019)

Review Cell Biology

Mernorane-Associatec RNA-Bincinc Proteins Orchestrate Orcanelle-Coupled Translation

Julien Bethune et al.

TRENDS IN CELL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

y Heterogeneous translational landscape of the endoplasmic reticulum revealed by ribosome proximity labeling and transcriptome analysis

Alyson M. Hoffman et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2019)

Article Virology

Zika Virus Subverts Stress Granules To Promote and Restrict Viral Gene Expression

Gaston Bonenfant et al.

JOURNAL OF VIROLOGY (2019)

Review Cell Biology

Versatility of Preprotein Transfer from the Cytosol to Mitochondria

Thomas Becker et al.

TRENDS IN CELL BIOLOGY (2019)

Article Multidisciplinary Sciences

Co-translational assembly of mammalian nuclear multisubunit complexes

Ivanka Kamenova et al.

NATURE COMMUNICATIONS (2019)

Article Cell Biology

Classical and emerging techniques to identify and quantify localized RNAs

J. Matthew Taliaferro

WILEY INTERDISCIPLINARY REVIEWS-RNA (2019)

Article Biochemistry & Molecular Biology

Atlas of Subcellular RNA Localization Revealed by APEX-Seq

Furqan M. Fazal et al.

Article Cell Biology

Fluorescence Imaging Methods to Investigate Translation in Single Cells

Jeetayu Biswas et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2019)

Article Cell Biology

Stress Granules and Processing Bodies in Translational Control

Pavel Ivanov et al.

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2019)

Article Multidisciplinary Sciences

Nanoparticle-based local translation reveals mRNA as a translation-coupled scaffold with anchoring function

Shunnichi Kashida et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Review Biochemistry & Molecular Biology

The Ways of Tails: the GET Pathway and more

Nica Borgese et al.

PROTEIN JOURNAL (2019)

Article Biology

Structural and mutational analysis of the ribosome-arresting human XBP1u

Vivekanandan Shanmuganathan et al.

Article Multidisciplinary Sciences

Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression

Chenglong Xia et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

Mapping spatial transcriptome with light-activated proximity-dependent RNA labeling

Pengchong Wang et al.

NATURE CHEMICAL BIOLOGY (2019)

Review Cell Biology

The Benefits of Cotranslational Assembly: A Structural Perspective

Andre Schwarz et al.

TRENDS IN CELL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Late Endosomes Act as mRNA Translation Platforms and Sustain Mitochondria in Axons

Jean-Michel Cioni et al.

Review Biochemistry & Molecular Biology

Peroxisome biogenesis, membrane contact sites, and quality control

Jean-Claude Farre et al.

EMBO REPORTS (2019)

Article Cell Biology

Multicolour single-molecule tracking of mRNA interactions with RNP granules

Stephanie L. Moon et al.

NATURE CELL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Nuclear processing of nascent transcripts determines synthesis of full-length proteins and antigenic peptides

Rodrigo Prado Martins et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Cell Biology

On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons

Toshiaki Shigeoka et al.

CELL REPORTS (2019)

Review Biochemistry & Molecular Biology

Interactions between the Translation Machinery and Microtubules

E. M. Chudinova et al.

BIOCHEMISTRY-MOSCOW (2018)

Review Biochemistry & Molecular Biology

The translational regulation of maternal mRNAs in time and space

Cecilia Lanny Winata et al.

FEBS LETTERS (2018)

Article Geriatrics & Gerontology

Cytoplasmic RNA Granules in Somatic Maintenance

Ossama Moujaber et al.

GERONTOLOGY (2018)

Review Biochemistry & Molecular Biology

The Unfolded Protein Response and Cell Fate Control

Claudio Hetz et al.

MOLECULAR CELL (2018)

Review Genetics & Heredity

Heterogeneity and specialized functions of translation machinery: from genes to organisms

Naomi R. Genuth et al.

NATURE REVIEWS GENETICS (2018)

Article Multidisciplinary Sciences

mRNA structure determines specificity of a polyQ-driven phase separation

Erin M. Langdon et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Defining the physiological role of SRP in protein-targeting efficiency and specificity

Elizabeth A. Costa et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

Three-dimensional intact-tissue sequencing of single-cell transcriptional states

Xiao Wang et al.

SCIENCE (2018)

Article Biochemistry & Molecular Biology

Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis

Christopher P. Lapointe et al.

CELL SYSTEMS (2018)

Review Biochemistry & Molecular Biology

Emerging Roles for Intermolecular RNA-RNA Interactions in RNP Assemblies

Briana Van Treeck et al.

Review Cell Biology

The peroxisome: an update on mysteries 2.0

Markus Islinger et al.

HISTOCHEMISTRY AND CELL BIOLOGY (2018)

Review Genetics & Heredity

Pimp My Ribosome: Ribosomal Protein Paralogs Specify Translational Control

Jeffrey E. Gerst

TRENDS IN GENETICS (2018)

Article Biochemical Research Methods

Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments

Daniel Benhalevy et al.

NATURE METHODS (2018)

Review Biochemistry & Molecular Biology

A concert of RNA-binding proteins coordinates mitochondrial function

Desiree Schatton et al.

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Not5-dependent co-translational assembly of Ada2 and Spt20 is essential for functional integrity of SAGA

Sari Kassem et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

αβ'-NAC cooperates with Sam37 to mediate early stages of mitochondrial protein import

Jose Carlos Ponce-Rojas et al.

FEBS JOURNAL (2017)

Article Cell Biology

CLUH regulates mitochondrial metabolism by controlling translation and decay of target mRNAs

Desiree Schatton et al.

JOURNAL OF CELL BIOLOGY (2017)

Article Cell Biology

Targeting and translocation of proteins to the endoplasmic reticulum at a glance

Naama Aviram et al.

JOURNAL OF CELL SCIENCE (2017)

Article Biochemistry & Molecular Biology

Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide

Zhen Shi et al.

MOLECULAR CELL (2017)

Review Cell Biology

Biomolecular condensates: organizers of cellular biochemistry

Salman F. Banani et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)

Review Biochemistry & Molecular Biology

Eukaryotic ribosome assembly, transport and quality control

Cohue Pena et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Review Biochemistry & Molecular Biology

mRNA localization in metazoans: A structural perspective

Daniela Lazzaretti et al.

RNA BIOLOGY (2017)

Article Multidisciplinary Sciences

RNA localization is a key determinant of neurite-enriched proteome

Alessandra Zappulo et al.

NATURE COMMUNICATIONS (2017)

Review Biochemistry & Molecular Biology

Eukaryotic ribosome assembly, transport and quality control

Cohue Pena et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)

Review Biochemistry & Molecular Biology

RNA localization: Making its way to the center stage

Ashley Chin et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2017)

Article Biochemistry & Molecular Biology

Visualization of cytosolic ribosomes on the surface of mitochondria by electron cryo-tomography

Vicki A. M. Gold et al.

EMBO REPORTS (2017)

Review Immunology

Translation inhibition and stress granules in the antiviral immune response

Craig McCormick et al.

NATURE REVIEWS IMMUNOLOGY (2017)

Review Cell Biology

Placeholder factors in ribosome biogenesis: please, pave my way

Francisco J. Espinar-Marchena et al.

MICROBIAL CELL (2017)

Article Biochemistry & Molecular Biology

The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity

Deniz Simsek et al.

Article Multidisciplinary Sciences

Structure of the Sec61 channel opened by a signal sequence

Rebecca M. Voorhees et al.

SCIENCE (2016)

Review Biochemistry & Molecular Biology

Localization of nuclear-encoded mRNAs to mitochondria outer surface

A. Golani-Armon et al.

BIOCHEMISTRY-MOSCOW (2016)

Review Biochemistry & Molecular Biology

Organization of the native ribosome-translocon complex at the mammalian endoplasmic reticulum membrane

Stefan Pfeffer et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS (2016)

Review Biochemistry & Molecular Biology

A role for mRNA trafficking and localized translation in peroxisome biogenesis and function?

Gal Haimovich et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2016)

Article Biotechnology & Applied Microbiology

Genome-wide analysis of mRNAs associated with mouse peroxisomes

Aliaksandr A. Yarmishyn et al.

BMC GENOMICS (2016)

Review Biochemistry & Molecular Biology

The coming of age of the mitochondria-ER contact: a matter of thickness

M. Giacomello et al.

CELL DEATH AND DIFFERENTIATION (2016)

Article Biochemistry & Molecular Biology

Evolutionary Dynamics of Abundant Stop Codon Readthrough

Irwin Jungreis et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Comprehensive Identification of RNA-Binding Domains in Human Cells

Alfredo Castello et al.

MOLECULAR CELL (2016)

Article Multidisciplinary Sciences

Cotranslational signal-independent SRP preloading during membrane targeting

Justin W. Chartron et al.

NATURE (2016)

Article Neurosciences

The RNA-binding protein SFPQ orchestrates an RNA regulon to promote axon viability

Katharina E. Cosker et al.

NATURE NEUROSCIENCE (2016)

Article Multidisciplinary Sciences

Cotranslational association of mRNA encoding subunits of heteromeric ion channels

Fang Liu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Autonomous translational pausing is required for XBP1u mRNA recruitment to the ER via the SRP pathway

Satoshi Kanda et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Review Genetics & Heredity

Functional Translational Readthrough: A Systems Biology Perspective

Fabian Schueren et al.

PLOS GENETICS (2016)

Article Biochemistry & Molecular Biology

Poly(A)-binding proteins and mRNA localization: who rules the roost?

Nicola K. Gray et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2015)

Article Biochemistry & Molecular Biology

RNA Controls PolyQ Protein Phase Transitions

Huaiying Zhang et al.

MOLECULAR CELL (2015)

Review Cell Biology

Diversity and selectivity in mRNA translation on the endoplasmic reticulum

David W. Reid et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Hypoxia-induced gene expression results from selective mRNA partitioning to the endoplasmic reticulum

Jonas J. Staudacher et al.

NUCLEIC ACIDS RESEARCH (2015)

Review Biochemistry & Molecular Biology

Localized translation near the mitochondrial outer membrane: An update

Chen Lesnik et al.

RNA BIOLOGY (2015)

Article Multidisciplinary Sciences

The principle of antagonism ensures protein targeting specificity at the endoplasmic reticulum

Martin Gamerdinger et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Spatially resolved, highly multiplexed RNA profiling in single cells

Kok Hao Chen et al.

SCIENCE (2015)

Article Multidisciplinary Sciences

Structure of the native Sec61 protein-conducting channel

Stefan Pfeffer et al.

NATURE COMMUNICATIONS (2015)

Article Multidisciplinary Sciences

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw et al.

SCIENTIFIC REPORTS (2015)

Review Cell Biology

In the right place at the right time: visualizing and understanding mRNA localization

Adina R. Buxbaum et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Recent studies implicate the nucleolus as the major site of nuclear translation

Tina McLeod et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2014)

Article Biotechnology & Applied Microbiology

A network-based approach to dissect the cilia/centrosome complex interactome

Roberto Amato et al.

BMC GENOMICS (2014)

Article Biochemistry & Molecular Biology

The Unfolded Protein Response Triggers Selective mRNA Release from the Endoplasmic Reticulum

David W. Reid et al.

Review Microbiology

Hepatitis C Virus RNA Replication and Assembly: Living on the Fat of the Land

David Paul et al.

CELL HOST & MICROBE (2014)

Article Biochemistry & Molecular Biology

Signal peptide peptidase functions in ERAD to cleave the unfolded protein response regulator XBP1u

Chia-yi Chen et al.

EMBO JOURNAL (2014)

Article Biochemistry & Molecular Biology

Multifunctional Roles for the Protein Translocation Machinery in RNA Anchoring to the Endoplasmic Reticulum

Sujatha Jagannathan et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Article Cell Biology

Early endosome motility spatially organizes polysome distribution

Yujiro Higuchi et al.

JOURNAL OF CELL BIOLOGY (2014)

Article Multidisciplinary Sciences

Most Human Proteins Made in Both Nucleus and Cytoplasm Turn Over within Minutes

Sabyasachi Baboo et al.

PLOS ONE (2014)

Review Biochemistry & Molecular Biology

mRNA localization in the Drosophila germline

Timothy T. Weil

RNA BIOLOGY (2014)

Review Biochemistry & Molecular Biology

mRNP granules Assembly, function, and connections with disease

J. Ross Buchan

RNA BIOLOGY (2014)

Article Multidisciplinary Sciences

Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling

Christopher C. Williams et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Highly Multiplexed Subcellular RNA Sequencing in Situ

Je Hyuk Lee et al.

SCIENCE (2014)

Review Virology

Membranous Replication Factories Induced by Plus-Strand RNA Viruses

Ines Romero-Brey et al.

VIRUSES-BASEL (2014)

Article Genetics & Heredity

The Not5 Subunit of the Ccr4-Not Complex Connects Transcription and Translation

Zoltan Villanyi et al.

PLOS GENETICS (2014)

Article Cell Biology

Dark matter worlds of unstable RNA and protein

Sabyasachi Baboo et al.

NUCLEUS (2014)

Article Neurosciences

Translation and silencing in RNA granules: a tale of sand grains

Jerónimo Pimentel et al.

Frontiers in Molecular Neuroscience (2014)

Review Biochemistry & Molecular Biology

Co-translational targeting and translocation of proteins to the endoplasmic reticulum

Yvonne Nyathi et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2013)

Review Biochemistry & Molecular Biology

Protein targeting to subcellular organelles via mRNA localization

Benjamin L. Weis et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2013)

Review Biochemistry & Molecular Biology

Post-translational translocation into the endoplasmic reticulum

Nicholas Johnson et al.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2013)

Review Biochemistry & Molecular Biology

All roads lead to Rome (but some may be harder to travel): SRP-independent translocation into the endoplasmic reticulum

Tslil Ast et al.

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Association of the Yeast RNA-binding Protein She2p with the Tubular Endoplasmic Reticulum Depends on Membrane Curvature

Christian Genz et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Article Cell Biology

The RNA-binding protein Fus directs translation of localized mRNAs in APC-RNP granules

Kyota Yasuda et al.

JOURNAL OF CELL BIOLOGY (2013)

Article Multidisciplinary Sciences

Reactivation of stalled polyribosomes in synaptic plasticity

Tyson E. Graber et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Editorial Material Multidisciplinary Sciences

Nuclear translation for immunosurveillance

Jonathan W. Yewdell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway

Sebastien Apcher et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemistry & Molecular Biology

Structural organization of the polysomes adjacent to mammalian processing bodies (P-bodies)

Nicolas Cougot et al.

RNA BIOLOGY (2013)

Review Virology

Diversion of stress granules and P-bodies during viral infection

Lucas C. Reineke et al.

VIROLOGY (2013)

Review Physiology

Dual targeting of peroxisomal proteins

Julia Ast et al.

FRONTIERS IN PHYSIOLOGY (2013)

Article Cell Biology

An Intracellular Transmission Control Protocol: assembly and transport of ribonucleoprotein complexes

Virginie Marchand et al.

CURRENT OPINION IN CELL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

The protein chaperone Ssa1 affects mRNA localization to the mitochondria

Erez Eliyahu et al.

FEBS LETTERS (2012)

Article Biochemistry & Molecular Biology

Primary Role for Endoplasmic Reticulum-bound Ribosomes in Cellular Translation Identified by Ribosome Profiling

David W. Reid et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2012)

Editorial Material Cell Biology

The enduring enigma of nuclear translation

David W. Reid et al.

JOURNAL OF CELL BIOLOGY (2012)

Article Cell Biology

Nuclear translation visualized by ribosome-bound nascent chain puromycylation

Alexandre David et al.

JOURNAL OF CELL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts

Alexander G. Baltz et al.

MOLECULAR CELL (2012)

Article Cell Biology

Drosophila patterning is established by differential association of mRNAs with P bodies

Timothy T. Weil et al.

NATURE CELL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Regulation of polysome assembly on the endoplasmic reticulum by a coiled-coil protein, p180

Tomonori Ueno et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Neuronal mRNAs travel singly into dendrites

Mona Batish et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Cell Biology

mRNA Localization and Translational Control in Drosophila Oogenesis

Paul Lasko

COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)

Article Biochemistry & Molecular Biology

p180 Promotes the Ribosome-Independent Localization of a Subset of mRNA to the Endoplasmic Reticulum

Xianying A. Cui et al.

PLOS BIOLOGY (2012)

Editorial Material Cell Biology

Nuclear translation or nuclear peptidyl transferase?

James Dahlberg et al.

NUCLEUS (2012)

Article Biochemistry & Molecular Biology

Messengers, motors and mysteries: sorting of eukaryotic mRNAs by cytoskeletal transport

Simon L. Bullock

BIOCHEMICAL SOCIETY TRANSACTIONS (2011)

Review Biochemistry & Molecular Biology

Dual targeting of mitochondrial proteins: Mechanism, regulation and function

Ohad Yogev et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2011)

Article Biochemistry & Molecular Biology

A Calmodulin-Dependent Translocation Pathway for Small Secretory Proteins

Sichen Shao et al.

Article Biochemistry & Molecular Biology

The Human Mitochondrial Transcriptome

Tim R. Mercer et al.

Article Biochemistry & Molecular Biology

The centrosome and spindle as a ribonucleoprotein complex

Mark C. Alliegro

CHROMOSOME RESEARCH (2011)

Article Multidisciplinary Sciences

Translational Pausing Ensures Membrane Targeting and Cytoplasmic Splicing of XBP1u mRNA

Kota Yanagitani et al.

SCIENCE (2011)

Review Cell Biology

PUF proteins: repression, activation and mRNA localization

Tara Quenault et al.

TRENDS IN CELL BIOLOGY (2011)

Article Genetics & Heredity

Widespread Cotranslational Formation of Protein Complexes

Caia D. S. Duncan et al.

PLOS GENETICS (2011)

Article Biochemistry & Molecular Biology

Transmembrane Receptor DCC Associates with Protein Synthesis Machinery and Regulates Translation

Joseph Tcherkezian et al.

Article Biochemistry & Molecular Biology

Proteomic and functional analysis of the mitotic Drosophila centrosome

Hannah Mueller et al.

EMBO JOURNAL (2010)

Article Biochemistry & Molecular Biology

Mitochondrial presequence and open reading frame mediate asymmetric localization of messenger RNA

Mathilde Garcia et al.

EMBO REPORTS (2010)

Article Biochemistry & Molecular Biology

mRNA escape from stress granule sequestration is dictated by localization to the endoplasmic reticulum

H. Unsworth et al.

FASEB JOURNAL (2010)

Article Biochemistry & Molecular Biology

Discrete subcellular partitioning of human retrotransposon RNAs despite a common mechanism of genome insertion

John L. Goodier et al.

HUMAN MOLECULAR GENETICS (2010)

Article Biochemistry & Molecular Biology

Tom20 Mediates Localization of mRNAs to Mitochondria in a Translation-Dependent Manner

Erez Eliyahu et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Review Biochemistry & Molecular Biology

Addressing mRNAs to the ER: cis sequences act up!

Judith Kraut-Cohen et al.

TRENDS IN BIOCHEMICAL SCIENCES (2010)

Article Genetics & Heredity

Characterization of LINE-1 Ribonucleoprotein Particles

Aurelien J. Doucet et al.

PLOS GENETICS (2010)

Article Neurosciences

Axonal mRNA in Uninjured and Regenerating Cortical Mammalian Axons

Anne M. Taylor et al.

JOURNAL OF NEUROSCIENCE (2009)

Article Biochemistry & Molecular Biology

Cotranslational Targeting of XBP1 Protein to the Membrane Promotes Cytoplasmic Splicing of Its Own mRNA

Kota Yanagitani et al.

MOLECULAR CELL (2009)

Article Multidisciplinary Sciences

Oligosaccharyltransferase directly binds to ribosome at a location near the translocon-binding site

Yoichiro Harada et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Localization of mRNAs coding for peroxisomal proteins in the yeast, Saccharomyces cerevisiae

Gadi Zipor et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Synapse- and Stimulus-Specific Local Translation During Long-Term Neuronal Plasticity

Dan Ohtan Wang et al.

SCIENCE (2009)

Review Cell Biology

To localize or not to localize: mRNA fate is in 3′UTR ends

Catia Andreassi et al.

TRENDS IN CELL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Subcellular localization of mRNA and factors involved in translation initiation

Nathaniel P. Hoyle et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2008)

Article Biochemistry & Molecular Biology

Whi3, a developmental regulator of budding yeast, binds a large set of mRNAs functionally related to the endoplasmic reticulum

Neus Colomina et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Article Multidisciplinary Sciences

Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions

Stavroula Mili et al.

NATURE (2008)

Article Multidisciplinary Sciences

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization

Yann Saint-Georges et al.

PLOS ONE (2008)

Article Biochemistry & Molecular Biology

Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum

Brook Pyhtila et al.

Article Biochemistry & Molecular Biology

Functional specificity among ribosomal proteins regulates gene expression

Suzanne Komili et al.

Article Biochemistry & Molecular Biology

Translation-coupled translocation of yeast fumarase into mitochondria in vivo

Ohad Yogev et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Biochemistry & Molecular Biology

Ribosomal slowdown mediates translational arrest during cellular division

Gilad Sivan et al.

MOLECULAR AND CELLULAR BIOLOGY (2007)

Review Neurosciences

Dendritic mRNA: transport, translation and function

Clive R. Bramham et al.

NATURE REVIEWS NEUROSCIENCE (2007)

Article Cell Biology

The ribosome filter redux

Vincent P. Mauro et al.

CELL CYCLE (2007)

Article Biochemistry & Molecular Biology

Local activation of yeast ASH1 mRNA translation through phosphorylation of Khd1p by the casein kinase Yck1p

Nicolas Paquin et al.

MOLECULAR CELL (2007)

Article Biochemical Research Methods

Molecular composition of IMP1 ribonucleoprotein granules

Lars Jonson et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Genetics & Heredity

Genome-scale identification of membrane-associated human mRNAs

Maximilian Diehn et al.

PLOS GENETICS (2006)

Article Biochemistry & Molecular Biology

Pathways for compartmentalizing protein synthesis in eukaryotic cells: the template-partitioning model

CV Nicchitta et al.

BIOCHEMISTRY AND CELL BIOLOGY (2005)

Article Multidisciplinary Sciences

Spatial regulation of β-actin translation by Src-dependent phosphorylation of ZBP1

S Hüttelmaier et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

A Rae1-containing ribonucleoprotein complex is required for mitotic spindle assembly

MD Blower et al.

Article Biochemistry & Molecular Biology

Ribosomes specifically bind to mammalian mitochondria via protease-sensitive proteins on the outer membrane

JA MacKenzie et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

A co-translational model to explain the in vivo import of proteins into HeLa cell mitochondria

A Mukhopadhyay et al.

BIOCHEMICAL JOURNAL (2004)

Article Cell Biology

The case for nuclear translation

FJ Iborra et al.

JOURNAL OF CELL SCIENCE (2004)

Review Biochemistry & Molecular Biology

Nuclear translation: What is the evidence?

JE Dahlberg et al.

Article Multidisciplinary Sciences

Asymmetric inheritance of centrosomally localized mRNAs during embryonic cleavages

JD Lambert et al.

NATURE (2002)

Article Biochemistry & Molecular Biology

Genome-wide analysis of mRNAs targeted to yeast mitochondria

P Marc et al.

EMBO REPORTS (2002)

Article Multidisciplinary Sciences

Coupled transcription and translation within nuclei of mammalian cells

FJ Iborra et al.

SCIENCE (2001)

Article Biochemistry & Molecular Biology

Regulation of ribosome detachment from the mammalian endoplasmic reticulum membrane

MD Potter et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)