相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation
Xiuye Wang et al.
PLOS GENETICS (2021)
Dissecting Herpes Simplex Virus 1-Induced Host Shutoff at the RNA Level
Caroline C. Friedel et al.
JOURNAL OF VIROLOGY (2021)
RNA Polymerase II Promoter-Proximal Pausing and Release to Elongation Are Key Steps Regulating Herpes Simplex Virus 1 Transcription
Claire H. Birkenheuer et al.
JOURNAL OF VIROLOGY (2020)
Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27
Xiuye Wang et al.
NATURE COMMUNICATIONS (2020)
Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation
David Trombley McSwiggen et al.
ELIFE (2019)
Nascent RNA analyses: tracking transcription and its regulation
Erin M. Wissink et al.
NATURE REVIEWS GENETICS (2019)
Herpes simplex viral nucleoprotein creates a competitive transcriptional environment facilitating robust viral transcription and host shut off
Sarah E. Dremel et al.
ELIFE (2019)
Herpes Simplex Virus 1 Dramatically Alters Loading and Positioning of RNA Polymerase II on Host Genes Early in Infection
Claire H. Birkenheuer et al.
JOURNAL OF VIROLOGY (2018)
HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes
Thomas Hennig et al.
PLOS PATHOGENS (2018)
A Herpesviral Immediate Early Protein Promotes Transcription Elongation of Viral Transcripts
Hannah L. Fox et al.
MBIO (2017)
Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection
Emanuel Wyler et al.
GENOME BIOLOGY (2017)
Transcriptional Elongation of HSV Immediate Early Genes by the Super Elongation Complex Drives Lytic Infection and Reactivation from Latency
Roberto Alfonso-Dunn et al.
CELL HOST & MICROBE (2017)
Infection by Herpes Simplex Virus 1 Causes Near-Complete Loss of RNA Polymerase II Occupancy on the Host Cell Genome
Robert G. Abrisch et al.
JOURNAL OF VIROLOGY (2016)
An Essential Viral Transcription Activator Modulates Chromatin Dynamics
Rebecca L. Gibeault et al.
PLOS PATHOGENS (2016)
Widespread disruption of host transcription termination in HSV-1 infection
Andrzej J. Rutkowski et al.
NATURE COMMUNICATIONS (2015)
The Molecular Signatures Database Hallmark Gene Set Collection
Arthur Liberzon et al.
CELL SYSTEMS (2015)
The RNA polymerase II preinitiation complex Through what pathway is the complex assembled?
Donal S. Luse
TRANSCRIPTION-AUSTIN (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Mechanistic Interpretation of Promoter-Proximal Peaks and RNAPII Density Maps
Andreas H. Ehrensberger et al.
CELL (2013)
Requirement of the N-Terminal Activation Domain of Herpes Simplex Virus ICP4 for Viral Gene Expression
Lauren M. Wagner et al.
JOURNAL OF VIROLOGY (2013)
Temporal Association of Herpes Simplex Virus ICP4 with Cellular Complexes Functioning at Multiple Steps in PolII Transcription
Lauren M. Wagner et al.
PLOS ONE (2013)
Analysis of the cellular uptake and nuclear delivery of insulin-like growth factor binding protein-3 in human osteosarcoma cells
Lucia Micutkova et al.
INTERNATIONAL JOURNAL OF CANCER (2012)
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
Karen Adelman et al.
NATURE REVIEWS GENETICS (2012)
Herpes Simplex Viruses: Mechanisms of DNA Replication
Sandra K. Weller et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)
Defining the Status of RNA Polymerase at Promoters
Leighton J. Core et al.
CELL REPORTS (2012)
Herpes Simplex Virus 1 ICP4 Forms Complexes with TFIID and Mediator in Virus-Infected Cells
Jonathan T. Lester et al.
JOURNAL OF VIROLOGY (2011)
The Herpes Simplex Virus-1 Transactivator Infected Cell Protein-4 Drives VEGF-A Dependent Neovascularization
Todd Wuest et al.
PLOS PATHOGENS (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
rtracklayer: an R package for interfacing with genome browsers
Michael Lawrence et al.
BIOINFORMATICS (2009)
The Two Functions of Herpes Simplex Virus 1 ICP0, Inhibition of Silencing by the CoREST/REST/HDAC Complex and Degradation of PML, Are Executed in Tandem
Haidong Gu et al.
JOURNAL OF VIROLOGY (2009)
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
Da Wei Huang et al.
NUCLEIC ACIDS RESEARCH (2009)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Binding of ICP4, TATA-binding protein, and RNA polymerase II to herpes simplex virus type 1 immediate-early, early, and late promoters in virus-infected cells
Padmavathi Sampath et al.
JOURNAL OF VIROLOGY (2008)
Establishment and mitotic stability of an extra-chromosomal mammalian replicon
Isa M. Stehle et al.
BMC CELL BIOLOGY (2007)
Herpes simplex virus immediate-early protein ICP22 triggers loss of serine 2-phosphorylated RNA polymerase II
Kathryn A. Fraser et al.
JOURNAL OF VIROLOGY (2007)
Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters
Chuhu Yang et al.
GENE (2007)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
The carboxyl-terminal domain of RNA polymerase II is phosphorylated by a complex containing cdk9 and infected-cell protein 22 of herpes simplex virus 1
LO Durand et al.
JOURNAL OF VIROLOGY (2005)
Components of the REST/CoREST/histone deacetylase repressor complex are disrupted, modified, and translocated in HSV-1-infected cells
HD Gu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
The herpes simplex virus ICP0 RING finger domain inhibits IRF3 and IRF7-mediated activation of interferon-stimulated genes
RT Lin et al.
JOURNAL OF VIROLOGY (2004)
Open source clustering software
MJL de Hoon et al.
BIOINFORMATICS (2004)
Expression of herpes simplex virus ICP0 inhibits the induction of interferon-stimulated genes by viral infection
KM Eidson et al.
JOURNAL OF VIROLOGY (2002)
Regulation of CSF1 promoter by the SWI/SNF-like BAF complex
R Liu et al.
CELL (2001)
Herpes simplex virus type 1 ICP4 promotes transcription preinitiation complex formation by enhancing the binding of TFIID to DNA
B Grondin et al.
JOURNAL OF VIROLOGY (2000)