4.5 Article

Changes in the transcript and protein profiles of Quercus ilex seedlings in response to drought stress

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Proteomics Data Analysis for the Identification of Proteins and Derived Proteotypic Peptides of Potential Use as Putative Drought Tolerance Markers for Quercus ilex

Bonoso San-Eufrasio et al.

Summary: The study aimed to identify potential markers for drought tolerance in holm oak by analyzing proteins and derived peptides. A total of 30 proteins and 46 peptides related to redox, stress, synthesis, folding, degradation, and metabolism were identified in drought experiments on seedlings from four different provenances. Two proteins, subtilisin and chaperone GrpE protein, showed increased levels in three populations, making them promising markers for validation in future experiments.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Review Forestry

Molecular Research on Stress Responses in Quercus spp.: From Classical Biochemistry to Systems Biology through Omics Analysis

Monica Escandon et al.

Summary: The genus Quercus, comprising around 500 species of oak trees, is threatened by environmental cues of biotic or abiotic origin. Biotechnology plays a crucial role in proposing sustainable management and conservation strategies for forests, with a focus on exploiting natural diversity and selecting more resilient genotypes. Research on molecular mechanisms of stress tolerance and resistance, as well as the identification of related genes and metabolites, is being carried out using omics approaches integrated with physiological and morphological techniques.

FORESTS (2021)

Article Biochemistry & Molecular Biology

The Mitochondrial Small Heat Shock Protein HSP22 from Pea is a Thermosoluble Chaperone Prone to Co-Precipitate with Unfolding Client Proteins

Marie-Helene Avelange-Macherel et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2020)

Article Biochemical Research Methods

Quantitative Analysis of Target Peptides Related to Resistance Against Ascochyta Blight (Peyronellaea pinodes) in Pea

Maria-Angeles Castillejo et al.

JOURNAL OF PROTEOME RESEARCH (2020)

Review Biochemistry & Molecular Biology

Proteomics, Holm Oak (Quercus ilex L.) and Other Recalcitrant and Orphan Forest Tree Species: How do They See Each Other?

Maria-Dolores Rey et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

Review Plant Sciences

Holm Oak Somatic Embryogenesis: Current Status and Future Perspectives

Maria Teresa Martinez et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Biochemistry & Molecular Biology

The PRIDE database and related tools and resources in 2019: improving support for quantification data

Yasset Perez-Riverol et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

GeneMANIA update 2018

Max Franz et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data

Rafael Hernandez-de-Diego et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemical Research Methods

Sma3s: A universal tool for easy functional annotation of proteomes and transcriptomes

Carlos S. Casimiro-Soriguer et al.

PROTEOMICS (2017)

Article Biochemical Research Methods

mixOmics: An R package for 'omics feature selection and multiple data integration

Florian Rohart et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Both Hsp70 chaperone and Clp protease plastidial systems are required for protection against oxidative stress

Pablo Pulido et al.

PLANT SIGNALING & BEHAVIOR (2017)

Article Biochemistry & Molecular Biology

Holm Oak (Quercus ilex) Transcriptome. De novo Sequencing and Assembly Analysis

Victor M. Guerrero-Sanchez et al.

FRONTIERS IN MOLECULAR BIOSCIENCES (2017)

Review Biochemistry & Molecular Biology

Abiotic Stress Signaling and Responses in Plants

Jian-Kang Zhu

Article Biochemistry & Molecular Biology

Understanding pea resistance mechanisms in response to Fusarium oxysporum through proteomic analysis

Maria Angeles Castillejo et al.

PHYTOCHEMISTRY (2015)

Article Biotechnology & Applied Microbiology

Evaluation of de novo transcriptome assemblies from RNA-Seq data

Bo Li et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Physiological and Proteomic Analyses of Drought Stress Response in Holm Oak Provenances

Jose Valero-Galvan et al.

JOURNAL OF PROTEOME RESEARCH (2013)

Article Biochemistry & Molecular Biology

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

Davis J. McCarthy et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

Fernando Garcia-Alcalde et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Article Biochemical Research Methods

Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies

Sebastien Boisvert et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

David Warde-Farley et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biotechnology & Applied Microbiology

A scaling normalization method for differential expression analysis of RNA-seq data

Mark D. Robinson et al.

GENOME BIOLOGY (2010)

Article Plant Sciences

Changes in the protein profile of Quercus ilex leaves in response to drought stress and recovery

Sira Echevarria-Zomeno et al.

JOURNAL OF PLANT PHYSIOLOGY (2009)

Article Biochemical Research Methods

Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae

Boris Zybailov et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Article Biochemical Research Methods

Absolute quantification of proteins by LCMSE - A virtue of parallel MS acquisition

JC Silva et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Article Multidisciplinary Sciences

AtFtsH6 is involved in the degradation of the light-harvesting complex II during high-light acclimation and senescence

A Zelisko et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Biochemistry & Molecular Biology

Remodeling protein complexes: Insights from the AAA plus unfoldase ClpX and Mu transposase

BM Burton et al.

PROTEIN SCIENCE (2005)

Review Biochemistry & Molecular Biology

Small heat shock proteins and stress tolerance in plants

WN Sun et al.

BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION (2002)