相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。New Insights into Folding, Misfolding, and Nonfolding Dynamics of a WW Domain
Khatuna Kachlishvili et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2020)
Crowding, Sticking, and Partial Folding of GTT WW Domain in a Small Cytoplasm Model
M. M. Rickard et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2020)
Sampling of the conformational landscape of small proteins with Monte Carlo methods
Nana Heilmann et al.
SCIENTIFIC REPORTS (2020)
Thermally versus Chemically Denatured Protein States
Abhishek Narayan et al.
BIOCHEMISTRY (2019)
Ultrafast folding kinetics of WW domains reveal how the amino acid sequence determines the speed limit to protein folding
Malwina Szczepaniak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Factors Stabilizing β-Sheets in Protein Structures from a Quantum-Chemical Perspective
Martin Culka et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2019)
Explicit Characterization of the Free Energy Landscape of pKID-KIX Coupled Folding and Binding
Song-Ho Chong et al.
ACS CENTRAL SCIENCE (2019)
Propagated Perturbations from a Peripheral Mutation Show Interactions Supporting WW Domain Thermostability
Meiling Zhang et al.
STRUCTURE (2018)
Overcoming Convergence Issues in Free-Energy Calculations of Amide-to-Ester Mutations in the Pin1-WW Domain
Daniel Markthaler et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2018)
Dynamics of Hydration Water Plays a Key Role in Determining the Binding Thermodynamics of Protein Complexes
Song-Ho Chong et al.
SCIENTIFIC REPORTS (2017)
Using Cooperatively Folded Peptides To Measure Interaction Energies and Conformational Propensities
Maziar S. Ardejani et al.
ACCOUNTS OF CHEMICAL RESEARCH (2017)
High-Resolution Mapping of the Folding Transition State of a WW Domain
Kapil Dave et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
Microscopic interpretation of folding φ-values using the transition path ensemble
Robert B. Best et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Distinct Role of Hydration Water in Protein Misfolding and Aggregation Revealed by Fluctuating Thermodynamics Analysis
Song-Ho Chong et al.
ACCOUNTS OF CHEMICAL RESEARCH (2015)
Dissecting Protein Configurational Entropy into Conformational and Vibrational Contributions
Song-Ho Chong et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2015)
Bridging Experiments and Native-Centric Simulations of a Downhill Folding Protein
Athi N. Naganathan et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2015)
Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations
Stefano Piana et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2014)
Protein Folding Thermodynamics: A New Computational Approach
Song-Ho Chong et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2014)
Contribution of hydrogen bonds to protein stability
C. Nick Pace et al.
PROTEIN SCIENCE (2014)
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
Daniel R. Roe et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald
Romelia Salomon-Ferrer et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
The Supramolecular Chemistry of β-Sheets
Pin-Nan Cheng et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
Effective inter-residue contact definitions for accurate protein fold recognition
Chao Yuan et al.
BMC BIOINFORMATICS (2012)
Dominant folding pathways of a WW domain
Silvio A. Beccara et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Impact of chemical heterogeneity on protein self-assembly in water
Song-Ho Chong et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Configurational entropy of protein: A combined approach based on molecular simulation and integral-equation theory of liquids
Song-Ho Chong et al.
CHEMICAL PHYSICS LETTERS (2011)
Atomic decomposition of the protein solvation free energy and its application to amyloid-beta protein in water
Song-Ho Chong et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
How Fast-Folding Proteins Fold
Kresten Lindorff-Larsen et al.
SCIENCE (2011)
WW: An isolated three-stranded antiparallel β-sheet domain that unfolds and refolds reversibly; evidence for a structured hydrophobic cluster in urea and GdnHCl and a disordered thermal unfolded state
Edward K. Koepf et al.
PROTEIN SCIENCE (2010)
Atomic-Level Characterization of the Structural Dynamics of Proteins
David E. Shaw et al.
SCIENCE (2010)
Force Field Bias in Protein Folding Simulations
Peter L. Freddolino et al.
BIOPHYSICAL JOURNAL (2009)
Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins
Jianmin Gao et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2009)
An experimental survey of the transition between two-state and downhill protein folding scenarios
Feng Liu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Influence of hPin1 WWN-terminal domain boundaries on function, protein stability, and folding
Marcus Jaeger et al.
PROTEIN SCIENCE (2007)
Comparison of multiple amber force fields and development of improved protein backbone parameters
Viktor Hornak et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
A theoretical analysis on hydration thermodynamics of proteins
Takashi Imai et al.
JOURNAL OF CHEMICAL PHYSICS (2006)
Structure-function-folding relationship in a WW domain
Marcus Jaeger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Protein folding thermodynamics and dynamics: Where physics, chemistry, and biology meet
Eugene Shakhnovich
CHEMICAL REVIEWS (2006)
Toward assessing the position-dependent contributions of backbone hydrogen bonding to β-sheet folding thermodynamics employing amide-to-ester perturbations
S Deechongkit et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)
Energetics of hydrogen bonds in peptides
SY Sheu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
分享论文
