4.4 Article

SAMPL7 physical property prediction from EC-RISM theory

期刊

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
卷 35, 期 8, 页码 933-941

出版社

SPRINGER
DOI: 10.1007/s10822-021-00410-9

关键词

SAMPL; Distribution coefficient; Solvation model; Quantum chemistry; Integral equation theory; EC-RISM

资金

  1. Deutsche Forschun-gsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy [390677874, FOR 1979, EXC-2033]
  2. NIH [R01GM124270]

向作者/读者索取更多资源

The study successfully predicted Gibbs energies of species in solution within SAMPL6.1 and SAMPL6.2 challenges using the EC-RISM model combined with quantum-mechanical calculations and three-dimensional RISM theory. While the pK(a) predictions were very favorable, the log P model performance fell behind expectations, resulting in reasonable log D-7.4 predictions.
Inspired by the successful application of the embedded cluster reference interaction site model (EC-RISM), a combination of quantum-mechanical calculations with three-dimensional RISM theory to predict Gibbs energies of species in solution within the SAMPL6.1 (acidity constants, pK(a)) and SAMPL6.2 (octanol-water partition coefficients, log P) the methodology was applied to the recent SAMPL7 physical property challenge on aqueous pK(a) and octanol-water log P values. Not part of the challenge but provided by the organizers, we also computed distribution coefficients log D-7.4 from predicted pK(a) and log P data. While macroscopic pK(a) predictions compared very favorably with experimental data (root mean square error, RMSE 0.72 pK units), the performance of the log P model (RMSE 1.84) fell behind expectations from the SAMPL6.2 challenge, leading to reasonable log D-7.4 predictions (RMSE 1.69) from combining the independent calculations. In the post-submission phase, conformations generated by different methodology yielded results that did not significantly improve the original predictions. While overall satisfactory compared to previous log D challenges, the predicted data suggest that further effort is needed for optimizing the robustness of the partition coefficient model within EC-RISM calculations and for shaping the agreement between experimental conditions and the corresponding model description.

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