相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Molecular structure of a prevalent amyloid-β fibril polymorph from Alzheimer's disease brain tissue
Ujjayini Ghosh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)
Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis
Phuong H. Nguyen et al.
CHEMICAL REVIEWS (2021)
Development of lipid membrane based assays to accurately predict the transfection efficiency of cell-penetrating peptide-based gene nanoparticles
Nabil A. Alhakamy et al.
INTERNATIONAL JOURNAL OF PHARMACEUTICS (2020)
Synthetic molecular evolution of host cell-compatible, antimicrobial peptides effective against drug-resistant, biofilm-forming bacteria
Charles G. Starr et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Connecting Coil-to-Globule Transitions to Full Phase Diagrams for Intrinsically Disordered Proteins
Xiangze Zeng et al.
BIOPHYSICAL JOURNAL (2020)
Alternative proton-binding site and long-distance coupling in Escherichia coli sodium-proton antiporter NhaA
Jack A. Henderson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Ions Modulate Key Interactions between pHLIP and Lipid Membranes
Justin Westerfield et al.
BIOPHYSICAL JOURNAL (2019)
Divalent Cations and Lipid Composition Modulate Membrane Insertion and Cancer-Targeting Action of pHLIP
Victor Vasquez-Montes et al.
JOURNAL OF MOLECULAR BIOLOGY (2019)
Highly Sensitive Hill-Type Small-Molecule pH Probe That Recognizes the Reversed pH Gradient of Cancer Cells
Xiao Luo et al.
ANALYTICAL CHEMISTRY (2018)
Comparison of lipid-dependent bilayer insertion of pHLIP and its P20G variant
Victor Vasquez-Montes et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2018)
A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins
Jie Wang et al.
CELL (2018)
Cellular delivery of doxorubicin mediated by disulfide reduction of a peptide-dendrimer bioconjugate
Kelly E. Burns et al.
INTERNATIONAL JOURNAL OF PHARMACEUTICS (2018)
Membrane-Induced pKa Shifts in wt-pHLIP and Its L16H Variant
Diogo Vila-Vicosa et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2018)
pH-Dependent cooperativity and existence of a dry molten globule in the folding of a miniprotein BBL
Zhi Yue et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2018)
Relation between single-molecule properties and phase behavior of intrinsically disordered proteins
Gregory L. Dignon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Cooperative Nonbonded Forces Control Membrane Binding of the pH-Low Insertion Peptide pHLIP
Chitrak Gupta et al.
BIOPHYSICAL JOURNAL (2018)
Constant-pH Molecular Dynamics Simulations for Large Biomolecular Systems
Brian K. Radak et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2017)
Protonation Enhances the Inherent Helix-Forming Propensity of pHLIP
Chitrak Gupta et al.
ACS OMEGA (2017)
How Membrane-Active Peptides Get into Lipid Membranes
Marc-Antoine Sani et al.
ACCOUNTS OF CHEMICAL RESEARCH (2016)
Protonation-Driven Membrane Insertion of a pH-Low Insertion Peptide
Samuel Z. Hanz et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)
Phase Separation by Low Complexity Domains Promotes Stress Granule Assembly and Drives Pathological Fibrillization
Amandine Molliex et al.
CELL (2015)
A theoretical method to compute sequence dependent configurational properties in charged polymers and proteins
Lucas Sawle et al.
JOURNAL OF CHEMICAL PHYSICS (2015)
Sequence heuristics to encode phase behaviour in intrinsically disordered protein polymers
Felipe Garcia Quiroz et al.
NATURE MATERIALS (2015)
Tipping the Scale from Disorder to Alpha-helix: Folding of Amphiphilic Peptides in the Presence of Macroscopic and Molecular Interfaces
Cahit Dalgicdir et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Lightweight Object Oriented Structure Analysis: Tools for Building Tools to Analyze Molecular Dynamics Simulations
Tod D. Romo et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2014)
Uncovering pH-Dependent Transient States of Proteins with Buried Ionizable Residues
Garrett B. Goh et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
Discovery of a Novel Aggregation Domain in the Huntingtin Protein: Implications for the Mechanisms of Htt Aggregation and Toxicity
Zhe-Ming Wang et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2013)
Efficient 18F-Labeling of Large 37-Amino-Acid pHLIP Peptide Analogues and Their Biological Evaluation
Pierre Daumar et al.
BIOCONJUGATE CHEMISTRY (2012)
Modulation of the pHLIP Transmembrane Helix Insertion Pathway
Alexander G. Karabadzhak et al.
BIOPHYSICAL JOURNAL (2012)
Enhancing Conformation and Protonation State Sampling of Hen Egg White Lysozyme Using pH Replica Exchange Molecular Dynamics
Jason M. Swails et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
Robert B. Best et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Membrane physical properties influence transmembrane helix formation
Francisco N. Barrera et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Continuous Constant pH Molecular Dynamics in Explicit Solvent with pH-Based Replica Exchange
Jason A. Wallace et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2011)
Large shifts in pKa values of lysine residues buried inside a protein
Daniel G. Isom et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Charges in the hydrophobic interior of proteins
Daniel G. Isom et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Molecular determinants of the pKa values of Asp and Glu residues in staphylococcal nuclease
Carlos A. Castaneda et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation
Matthew G. Vander Heiden et al.
SCIENCE (2009)
Predicting Peptide Structures in Native Proteins from Physical Simulations of Fragments
Vincent A. Voelz et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Energetics of peptide (pHLIP) binding to and folding across a lipid bilayer membrane
Yana K. Reshetnyak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
A monomeric membrane peptide that lives in three worlds: In solution, attached to, and inserted across lipid bilayers
Yana K. Reshetnyak et al.
BIOPHYSICAL JOURNAL (2007)
Exploring atomistic details of pH-dependent peptide folding
Jana Khandogin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Constant-pH molecular dynamics with ionic strength effects: Protonation-conformation coupling in decalysine
M Machuqueiro et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2006)
Scalable molecular dynamics with NAMD
JC Phillips et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)