相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Molecular mechanism of light-driven sodium pumping
Kirill Kovalev et al.
NATURE COMMUNICATIONS (2020)
Femtosecond-to-millisecond structural changes in a light-driven sodium pump
Petr Skopintsev et al.
NATURE (2020)
Infrared spectroscopic analysis on structural changes around the protonated Schiff base upon retinal isomerization in light-driven sodium pump KR2
Sahoko Tomida et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2020)
Water-mediated biomolecular dynamics and allostery
David M. Leitner et al.
JOURNAL OF CHEMICAL PHYSICS (2020)
Diverse GPCRs exhibit conserved water networks for stabilization and activation
A. J. Venkatakrishnan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Engineered Passive Potassium Conductance in the KR2 Sodium Pump
Arend Vogt et al.
BIOPHYSICAL JOURNAL (2019)
Structure and mechanisms of sodium-pumping KR2 rhodopsin
Kirill Kovalev et al.
SCIENCE ADVANCES (2019)
Water follows polar and nonpolar protein surface domains
Baofu Qiao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Hydrogen-bonding network at the cytoplasmic region of a light-driven sodium pump rhodopsin KR2
Sahoko Tomida et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2018)
Light-Driven Sodium-Pumping Rhodopsin: A New Concept of Active Transport
Hideki Kandori et al.
CHEMICAL REVIEWS (2018)
How proteins modify water dynamics
Filip Persson et al.
JOURNAL OF CHEMICAL PHYSICS (2018)
Gradual Crossover from Subdiffusion to Normal Diffusion: A Many-Body Effect in Protein Surface Water
Pan Tan et al.
PHYSICAL REVIEW LETTERS (2018)
Retinal isomerization and water-pore formation in channelrhodopsin-2
Albert Ardevol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Electrical properties, substrate specificity and optogenetic potential of the engineered light-driven sodium pump eKR2
Christiane Grimm et al.
SCIENTIFIC REPORTS (2018)
Distinguishing dynamical features of water inside protein hydration layer: Distribution reveals what is hidden behind the average
Saumyak Mukherjee et al.
JOURNAL OF CHEMICAL PHYSICS (2017)
Energetics and dynamics of a light-driven sodium-pumping rhodopsin
Carl-Mikael Suomivuori et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Water Dynamics in the Hydration Shells of Biomolecules
Damien Laage et al.
CHEMICAL REVIEWS (2017)
Role of Asn112 in a Light-Driven Sodium Ion-Pumping Rhodopsin
Rei Abe-Yoshizumi et al.
BIOCHEMISTRY (2016)
Water Determines the Structure and Dynamics of Proteins
Marie-Claire Bellissent-Funel et al.
CHEMICAL REVIEWS (2016)
Untangling complex dynamics of biological water at protein-water interface
Biman Bagchi
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A Chimera Na+ -Pump Rhodopsin as an Effective Optogenetic Silencer
Mohammad Razuanul Hogue et al.
PLOS ONE (2016)
Proteorhodopsin Activation Is Modulated by Dynamic Changes in Internal Hydration
Jun Feng et al.
BIOCHEMISTRY (2015)
Structural Order of Water Molecules around Hydrophobic Solutes: Length-Scale Dependence and Solute-Solvent Coupling
Vrushali R. Hande et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2015)
Kinetic Analysis of H+-Na+ Selectivity in a Light-Driven Na+-Pumping Rhodopsin
Yoshitaka Kato et al.
JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2015)
Structural basis for Na+ transport mechanism by a light-driven Na+ pump
Hideaki E. Kato et al.
NATURE (2015)
Crystal structure of a light-driven sodium pump
Ivan Gushchin et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
Crystal structure of a light-driven sodium pump
Ivan Gushchin et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)
The role of protein-bound water molecules in microbial rhodopsins
Klaus Gerwert et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2014)
Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms
Oliver P. Ernst et al.
CHEMICAL REVIEWS (2014)
Water-Containing Hydrogen-Bonding Network in the Active Center of Channelrhodopsin
Shota Ito et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)
Activation of G-protein-coupled receptors correlates with the formation of a continuous internal water pathway
Shuguang Yuan et al.
NATURE COMMUNICATIONS (2014)
Transmembrane Protein Activation Refined by Site-Specific Hydration Dynamics
Sunyia Hussain et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2013)
A light-driven sodium ion pump in marine bacteria
Keiichi Inoue et al.
NATURE COMMUNICATIONS (2013)
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
Robert B. Best et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)
Biological water: A critique
Dongping Zhong et al.
CHEMICAL PHYSICS LETTERS (2011)
Proton transfer via a transient linear water-molecule chain in a membrane protein
Erik Freier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Structural waters define a functional channel mediating activation of the GPCR, rhodopsin
Thomas E. Angel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
A unified model of protein dynamics
Hans Frauenfelder et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Water in nonpolar confinement: From nanotubes to proteins and beyond
Jayendran C. Rasaiah et al.
ANNUAL REVIEW OF PHYSICAL CHEMISTRY (2008)
Water as an active constituent in cell biology
Philip Ball
CHEMICAL REVIEWS (2008)
Software news and updates - CHARNIM-GUI: A web-based grraphical user interface for CHARMM
Sunhwan Jo et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2008)
Key Role of Active-Site Water Molecules in Bacteriorhodopsin Proton-Transfer Reactions
Ana-Nicoleta Bondar et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Mapping hydration dynamics around a protein surface
Luyuan Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Structures and spectral signatures of protonated water networks in bacteriorhodopsin
Gerald Mathias et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Opinion - Do we underestimate the importance of water in cell biology?
Martin Chaplin
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
Millisecond-timescale, genetically targeted optical control of neural activity
ES Boyden et al.
NATURE NEUROSCIENCE (2005)
Water dynamics in the hydration layer around proteins and micelles
B Bagchi
CHEMICAL REVIEWS (2005)
Dynamics of water near a protein surface
SM Bhattacharyya et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2003)
Structural and dynamic properties of water around acetylcholinesterase
RH Henchman et al.
PROTEIN SCIENCE (2002)
Biological water: Femtosecond dynamics of macromolecular hydration
SK Pal et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2002)
Functional role of internal water molecules in rhodopsin revealed by x-ray crystallography
T Okada et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Structural determinants of spectral tuning in retinal proteins-bacteriorhodopsin vs sensory rhodopsin II
S Hayashi et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2001)
Rotational motion in liquid water is anisotropic: A nuclear magnetic resonance and molecular dynamics simulation study
J Ropp et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)
Proton transfer in bacteriorhodopsin: Structure, excitation, IR spectra, and potential energy surface analyses by an ab initio QM/MM method
S Hayashi et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2000)