相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。RNA Editing in Mitochondria and Plastids: Weird and Widespread
Julius Lukes et al.
TRENDS IN GENETICS (2021)
The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants
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MOLECULAR PLANT (2020)
The water lily genome and the early evolution of flowering plants
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Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis
Philipp Gerke et al.
NEW PHYTOLOGIST (2020)
Plant organellar RNA editing: what 30 years of research has revealed
Ian D. Small et al.
PLANT JOURNAL (2020)
Why so Complex? The Intricacy of Genome Structure and Gene Expression, Associated with Angiosperm Mitochondria, May Relate to the Regulation of Embryo Quiescence or Dormancy-Intrinsic Blocks to Early Plant Life
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Variation in protein gene and intron content among land plant mitogenomes
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MITOCHONDRION (2020)
DEK46 performs C-to-U editing of a specific site in mitochondrial nad7 introns that is critical for intron splicing and seed development in maize
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PLANT JOURNAL (2020)
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Jian-Jun Jin et al.
GENOME BIOLOGY (2020)
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
Stephan Greiner et al.
NUCLEIC ACIDS RESEARCH (2019)
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
Xiao-Jian Qu et al.
PLANT METHODS (2019)
Complete loss of RNA editing from the plastid genome and most highly expressed mitochondrial genes of Welwitschia mirabilis
Weishu Fan et al.
SCIENCE CHINA-LIFE SCIENCES (2019)
Evolutionary Model of Plastidial RNA Editing in Angiosperms Presumed from Genome-Wide Analysis of Amborella trichopoda
Kota Ishibashi et al.
PLANT AND CELL PHYSIOLOGY (2019)
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim et al.
NATURE BIOTECHNOLOGY (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0
Henning Lenz et al.
BMC BIOINFORMATICS (2018)
The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination
Shanshan Dong et al.
BMC GENOMICS (2018)
PacBio-Based Mitochondrial Genome Assembly of Leucaena trichandra (Leguminosae) and an Intrageneric Assessment of Mitochondrial RNA Editing
Lynsey Kovar et al.
GENOME BIOLOGY AND EVOLUTION (2018)
REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results
Shuangyang Wu et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2018)
Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns
Wenhu Guo et al.
NEW PHYTOLOGIST (2017)
RNA Editing and Its Molecular Mechanism in Plant Organelles
Mizuho Ichinose et al.
GENES (2017)
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
GENOME RESEARCH (2017)
GeSeq - versatile and accurate annotation of organelle genomes
Michael Tillich et al.
NUCLEIC ACIDS RESEARCH (2017)
Whole plastid transcriptomes reveal abundant RNA editing sites and differential editing status in Phalaenopsis aphrodite subsp formosana
Ting-Chieh Chen et al.
BOTANICAL STUDIES (2017)
Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data
Aboozar Soorni et al.
BMC GENOMICS (2017)
Multiple splicing pathways of group II trans-splicing introns in wheat mitochondria
Karen Massel et al.
MITOCHONDRION (2016)
LoRDEC: accurate and efficient long read error correction
Leena Salmela et al.
BIOINFORMATICS (2014)
Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs
Jun-Bo Yang et al.
MOLECULAR ECOLOGY RESOURCES (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
The fossilized mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate
Aaron O. Richardson et al.
BMC BIOLOGY (2013)
Two DYW Subclass PPR Proteins are Involved in RNA Editing of ccmFc and atp9 Transcripts in the Moss Physcomitrella patens: First Complete Set of PPR Editing Factors in Plant Mitochondria
Mizuho Ichinose et al.
PLANT AND CELL PHYSIOLOGY (2013)
Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella
Danny W. Rice et al.
SCIENCE (2013)
The Primary Transcriptome of Barley Chloroplasts: Numerous Noncoding RNAs and the Dominating Role of the Plastid-Encoded RNA Polymerase
Petya Zhelyazkova et al.
PLANT CELL (2012)
RNA Editing in Mitochondrial Trans-Introns Is Required for Splicing
Jean-Claude Farre et al.
PLOS ONE (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Group II Introns: Mobile Ribozymes that Invade DNA
Alan M. Lambowitz et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2011)
Comparison of mitochondrial and chloroplast genome segments from three onion (Allium cepa L.) cytoplasm types and identification of a trans-splicing intron of cox2
Sunggil Kim et al.
CURRENT GENETICS (2010)
Plant RNA editing
Anne-Laure Chateigner-Boutin et al.
RNA BIOLOGY (2010)
Trans-splicing of organelle introns - a detour to continuous RNAs
Stephanie Glanz et al.
BIOESSAYS (2009)
RNA Editing in Plant Mitochondria: 20 Years Later
Michael W. Gray
IUBMB LIFE (2009)
Cis- and trans-splicing of group II introns in plant mitochondria
Linda Bonen
MITOCHONDRION (2008)
Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts
Mareike Ruedinger et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Modeling sites of RNA editing as a fifth nucleotide state reveals progressive loss of edited sites from angiosperm mitochondria
Jeffrey P. Mower
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Mitochondrial introns: a critical view
B. Franz Lang et al.
TRENDS IN GENETICS (2007)
Relationship between RNA splicing and exon editing near intron junctions in wheat mitochondria
Jennifer Li-Pook-Than et al.
PHYSIOLOGIA PLANTARUM (2007)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
IMGT standardized criteria for statistical analysis of immunoglobulin V-REGION amino acid properties
C Pommie et al.
JOURNAL OF MOLECULAR RECOGNITION (2004)
Heterologous, splicing-dependent RNA editing in chloroplasts:: allotetraploidy provides trans-factors
C Schmitz-Linneweber et al.
EMBO JOURNAL (2001)
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