4.6 Article

Eight years of manure fertilization favor copiotrophic traits in paddy soil microbiomes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Microbiology

Experimental evidence for long-term coexistence of copiotrophic and oligotrophic bacteria in pelagic surface seawater

Yi Li et al.

Summary: The study explores the interaction and coexistence of copiotrophic and oligotrophic bacteria in the ocean. Copiotrophic bacteria utilize extracellular enzymes to degrade proteinaceous substrates, while oligotrophic bacteria rely on hydrolyzed amino acids for growth. Copiotrophic bacteria outcompete oligotrophic bacteria by quickly absorbing amino acids and having a higher growth rate, while oligotrophic bacteria survive by adapting to low nutrient concentrations. Both types of bacteria are able to maintain long-term coexistence in the laboratory setting.

ENVIRONMENTAL MICROBIOLOGY (2021)

Article Ecology

Cell size, genome size, and maximum growth rate are near-independent dimensions of ecological variation across bacteria and archaea

Mark Westoby et al.

Summary: Based on the most extensive data compilation so far, it was found that there is little correlation among maximum relative growth rate, cell diameter, and genome size in bacteria and archaea. These traits should be considered as independent dimensions of ecological variation, as they do not show a consistent relationship with each other. Species identified as oligotrophs or copiotrophs were separated based on maximum growth rate but not on genome size or cell diameter.

ECOLOGY AND EVOLUTION (2021)

Article Multidisciplinary Sciences

A trait-based understanding of wood decomposition by fungi

Nicky Lustenhouwer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Agriculture, Multidisciplinary

Effects of long-term organic fertilization on soil microbiologic characteristics, yield and sustainable production of winter wheat

Li Chun-xi et al.

JOURNAL OF INTEGRATIVE AGRICULTURE (2018)

Article Microbiology

Evaluating the core microbiota in complex communities: A systematic investigation

Carmen Astudillo-Garcia et al.

ENVIRONMENTAL MICROBIOLOGY (2017)

Article Environmental Sciences

Differential responses of soil bacterial taxa to long-term P, N, and organic manure application

Ying Wang et al.

JOURNAL OF SOILS AND SEDIMENTS (2016)

Article Multidisciplinary Sciences

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

Jonathan W. Leff et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Global diversity and geography of soil fungi

Leho Tedersoo et al.

SCIENCE (2014)

Review Microbiology

Archaea in Biogeochemical Cycles

Pierre Offre et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 67 (2013)

Article Biodiversity Conservation

Nitrogen deposition weakens plant-microbe interactions in grassland ecosystems

Cunzheng Wei et al.

GLOBAL CHANGE BIOLOGY (2013)

Review Plant Sciences

Environmental Impact of Different Agricultural Management Practices: Conventional vs. Organic Agriculture

Tiziano Gomiero et al.

CRITICAL REVIEWS IN PLANT SCIENCES (2011)

Review Soil Science

Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies

Donovan P. German et al.

SOIL BIOLOGY & BIOCHEMISTRY (2011)

Article Soil Science

Soil Acidification from Long-Term Use of Nitrogen Fertilizers on Winter Wheat

Jackie L. Schroder et al.

SOIL SCIENCE SOCIETY OF AMERICA JOURNAL (2011)

Article Biotechnology & Applied Microbiology

Metagenomic biomarker discovery and explanation

Nicola Segata et al.

GENOME BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Ab initio gene identification in metagenomic sequences

Wenhan Zhu et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Resource limitation is a driver of local adaptation in mycorrhizal symbioses

Nancy Collins Johnson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Significant Acidification in Major Chinese Croplands

J. H. Guo et al.

SCIENCE (2010)

Review Ecology

Global patterns in belowground communities

Noah Fierer et al.

ECOLOGY LETTERS (2009)

Article Ecology

Toward an ecological classification of soil bacteria

Noah Fierer et al.

ECOLOGY (2007)

Article Biochemistry & Molecular Biology

MEGAN analysis of metagenomic data

Daniel H. Huson et al.

GENOME RESEARCH (2007)

Review Microbiology

Phylogenetic diversity and ecology of environmental Archaea

CE Robertson et al.

CURRENT OPINION IN MICROBIOLOGY (2005)

Review Soil Science

Microbial diversity and soil functions

P Nannipieri et al.

EUROPEAN JOURNAL OF SOIL SCIENCE (2003)

Review Environmental Sciences

How sustainable agriculture can address the environmental and human health harms of industrial agriculture

L Horrigan et al.

ENVIRONMENTAL HEALTH PERSPECTIVES (2002)

Article Biochemistry & Molecular Biology

Oligotrophs versus copiotrophs

AL Koch

BIOESSAYS (2001)