4.5 Review Book Chapter

Plant long non-coding RNAs in the regulation of transcription

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

R-loop resolution promotes co-transcriptional chromatin silencing

Congyao Xu et al.

Summary: RNA-mediated chromatin silencing plays a central role in genome regulation across various organisms. In this study, researchers demonstrated that resolution of an R-loop during 3'-end processing of a plant antisense transcript recruits chromatin modifiers to promote chromatin silencing. Additionally, modulation of R-loop stability by co-transcriptional RNA processing can trigger chromatin silencing.

NATURE COMMUNICATIONS (2021)

Article Biochemistry & Molecular Biology

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA

Federico Ariel et al.

MOLECULAR CELL (2020)

Article Multidisciplinary Sciences

The 3′ processing of antisense RNAs physically links to chromatin-based transcriptional control

Xiaofeng Fang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Broad noncoding transcription suggests genome surveillance by RNA polymerase V

Masayuki Tsuzuki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

Arabidopsis FLL2 promotes liquid-liquid phase separation of polyadenylation complexes

Xiaofeng Fang et al.

NATURE (2019)

Review Cell Biology

Cellular functions of long noncoding RNAs

Run-Wen Yao et al.

NATURE CELL BIOLOGY (2019)

Article Multidisciplinary Sciences

PRC2 recruitment and H3K27me3 deposition at FLC require FCA binding of COOLAIR

Yongke Tian et al.

SCIENCE ADVANCES (2019)

Article Biology

Arabidopsis noncoding RNA modulates seedling greening during deetiolation

Yuqiu Wang et al.

SCIENCE CHINA-LIFE SCIENCES (2018)

Article Multidisciplinary Sciences

Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

Peter Kindgren et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA

Xinyue Zhao et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation

Jeremie Bazin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Cell Biology

Vernalization-Triggered Intragenic Chromatin Loop Formation by Long Noncoding RNAs

Dong-Hwan Kim et al.

DEVELOPMENTAL CELL (2017)

Article Biochemistry & Molecular Biology

Noncoding RNA NORAD Regulates Genomic Stability by Sequestering PUMILIO Proteins

Sungyul Lee et al.

Article Multidisciplinary Sciences

Local regulation of gene expression by lncRNA promoters, transcription and splicing

Jesse M. Engreitz et al.

NATURE (2016)

Article Multidisciplinary Sciences

Nascent RNA sequencing reveals distinct features in plant transcription

Jonathan Hetzel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Biochemistry & Molecular Biology

RNA Exosome-Regulated Long Non-Coding RNA Transcription Controls Super-Enhancer Activity

Evangelos Pefanis et al.

Article Biochemistry & Molecular Biology

Toward a Consensus on the Binding Specificity and Promiscuity of PRC2 for RNA

Chen Davidovich et al.

MOLECULAR CELL (2015)

Review Cell Biology

Histone exchange, chromatin structure and the regulation of transcription

Swaminathan Venkatesh et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)

Editorial Material Biochemistry & Molecular Biology

Discovery and annotation of long noncoding RNAs

John S. Mattick et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Editorial Material Biochemistry & Molecular Biology

Discovery and annotation of long noncoding RNAs

John S. Mattick et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2015)

Article Multidisciplinary Sciences

RNA helicase DDX21 coordinates transcription and ribosomal RNA processing

Eliezer Calo et al.

NATURE (2015)

Article Cell Biology

Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis

Florian Bardou et al.

DEVELOPMENTAL CELL (2014)

Article Biochemistry & Molecular Biology

Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop

Federico Ariel et al.

MOLECULAR CELL (2014)

Article Biochemistry & Molecular Biology

Functional Consequences of Splicing of the Antisense Transcript COOLAIR on FLC Transcription

Sebastian Marquardt et al.

MOLECULAR CELL (2014)

Article Multidisciplinary Sciences

An atlas of active enhancers across human cell types and tissues

Robin Andersson et al.

NATURE (2014)

Article Multidisciplinary Sciences

Antisense COOLAIR mediates the coordinated switching of chromatin states at FLC during vernalization

Tibor Csorba et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

Yuqiu Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Genetics & Heredity

NON-CODING RNA Gene regulation by antisense transcription

Vicent Pelechano et al.

NATURE REVIEWS GENETICS (2013)

Article Biochemistry & Molecular Biology

Promiscuous RNA binding by Polycomb repressive complex 2

Chen Davidovich et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Alternative 3′-end processing of long noncoding RNA initiates construction of nuclear paraspeckles

Takao Naganuma et al.

EMBO JOURNAL (2012)

Article Multidisciplinary Sciences

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

Jae Bok Heo et al.

SCIENCE (2011)

Article Plant Sciences

The Timing of Flowering

Richard M. Amasino et al.

PLANT PHYSIOLOGY (2010)

Article Multidisciplinary Sciences

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

Szymon Swiezewski et al.

NATURE (2009)

Review Genetics & Heredity

Diversity of Polycomb group complexes in plants: same rules, different players?

Lars Hennig et al.

TRENDS IN GENETICS (2009)

Article Multidisciplinary Sciences

RNA maps reveal new RNA classes and a possible function for pervasive transcription

Philipp Kapranov et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27

Daniel Schubert et al.

EMBO JOURNAL (2006)