相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。A meta-analysis on age-associated changes in blood DNA methylation: results from an original analysis pipeline for Infinium 450k data
Maria Giulia Bacalini et al.
AGING-US (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Methodological aspects of whole-genome bisulfite sequencing analysis
Swarnaseetha Adusumalli et al.
BRIEFINGS IN BIOINFORMATICS (2015)
Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing
Michael J. Ziller et al.
NATURE METHODS (2015)
DMAP: differential methylation analysis package for RRBS and WGBS data
Peter A. Stockwell et al.
BIOINFORMATICS (2014)
Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments
Egor Dolzhenko et al.
BMC BIOINFORMATICS (2014)
Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization
Kasper D. Hansen et al.
GENOME RESEARCH (2014)
Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing
Volker Hovestadt et al.
NATURE (2014)
Comprehensive analysis of DNA methylation data with RnBeads
Yassen Assenov et al.
NATURE METHODS (2014)
A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
Hao Feng et al.
NUCLEIC ACIDS RESEARCH (2014)
Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions
Yutaka Saito et al.
NUCLEIC ACIDS RESEARCH (2014)
DNA methylation signatures link prenatal famine exposure to growth and metabolism
Elmar W. Tobi et al.
NATURE COMMUNICATIONS (2014)
MOABS: model based analysis of bisulfite sequencing data
Deqiang Sun et al.
GENOME BIOLOGY (2014)
Statistical methods for detecting differentially methylated loci and regions
Mark D. Robinson et al.
FRONTIERS IN GENETICS (2014)
DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns
Kaie Lokk et al.
GENOME BIOLOGY (2014)
Detection of significantly differentially methylated regions in targeted bisulfite sequencing data
Katja Hebestreit et al.
BIOINFORMATICS (2013)
DNA methylation changes are a late event in acute promyelocytic leukemia and coincide with loss of transcription factor binding
Till Schoofs et al.
BLOOD (2013)
An optimized algorithm for detecting and annotating regional differential methylation
Sheng Li et al.
BMC BIOINFORMATICS (2013)
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
Weilong Guo et al.
BMC GENOMICS (2013)
RRBS-Analyser: A Comprehensive Web Server for Reduced Representation Bisulfite Sequencing Data Analysis
Tao Wang et al.
HUMAN MUTATION (2013)
Charting a dynamic DNA methylation landscape of the human genome
Michael J. Ziller et al.
NATURE (2013)
DNA methylation regulates associative reward learning
Jeremy J. Day et al.
NATURE NEUROSCIENCE (2013)
DNA methylation: roles in mammalian development
Zachary D. Smith et al.
NATURE REVIEWS GENETICS (2013)
COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis
Charles D. Warden et al.
NUCLEIC ACIDS RESEARCH (2013)
Differential DNA Methylation Regions in Cytokine and Transcription Factor Genomic Loci Associate with Childhood Physical Aggression
Nadine Provencal et al.
PLOS ONE (2013)
IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data
Dan Wang et al.
BIOINFORMATICS (2012)
Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values
Brent S. Pedersen et al.
BIOINFORMATICS (2012)
Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia
Lirong Pei et al.
EPIGENETICS (2012)
Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies
Andrew E. Jaffe et al.
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
DNA methylome analysis using short bisulfite sequencing data
Felix Krueger et al.
NATURE METHODS (2012)
A mostly traditional approach improves alignment of bisulfite-converted DNA
Martin C. Frith et al.
NUCLEIC ACIDS RESEARCH (2012)
DNA methylation-associated silencing of tumor-suppressor microRNAs in cancer
P. Lopez-Serra et al.
ONCOGENE (2012)
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
Kasper D. Hansen et al.
GENOME BIOLOGY (2012)
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
Altuna Akalin et al.
GENOME BIOLOGY (2012)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
DNA-binding factors shape the mouse methylome at distal regulatory regions
Michael B. Stadler et al.
NATURE (2011)
Increased methylation variation in epigenetic domains across cancer types
Kasper Daniel Hansen et al.
NATURE GENETICS (2011)
Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution
Hongcang Gu et al.
NATURE METHODS (2010)
Targeting DNA methylation for epigenetic therapy
Xiaojing Yang et al.
TRENDS IN PHARMACOLOGICAL SCIENCES (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
Human DNA methylomes at base resolution show widespread epigenomic differences
Ryan Lister et al.
NATURE (2009)
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
Rafael A. Irizarry et al.
NATURE GENETICS (2009)
Genome-scale DNA methylation maps of pluripotent and differentiated cells
Alexander Meissner et al.
NATURE (2008)
Moderated statistical tests for assessing differences in tag abundance
Mark D. Robinson et al.
BIOINFORMATICS (2007)
Testing against a high dimensional alternative
JJ Goeman et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2006)
Testing association of a pathway with survival using gene expression data
JJ Goeman et al.
BIOINFORMATICS (2005)
Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis
A Meissner et al.
NUCLEIC ACIDS RESEARCH (2005)
A global test for groups of genes: testing association with a clinical outcome
JJ Goeman et al.
BIOINFORMATICS (2004)