相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Integrative taxonomy and geographic sampling underlie successful species delimitation
Carla Cicero et al.
ORNITHOLOGY (2021)
The Multispecies Coalescent Over-Splits Species in the Case of Geographically Widespread Taxa
E. Anne Chambers et al.
SYSTEMATIC BIOLOGY (2020)
Metapopulation dynamics and foraging plasticity in a highly vagile seabird, the southern rockhopper penguin
Nicolas A. Lois et al.
ECOLOGY AND EVOLUTION (2020)
Cryptic speciation in gentoo penguins is driven by geographic isolation and regional marine conditions: Unforeseen vulnerabilities to global change
Luis R. Pertierra et al.
DIVERSITY AND DISTRIBUTIONS (2020)
Plumage patterns: Ecological functions, evolutionary origins, and advances in quantification
Nicholas A. Mason et al.
AUK (2020)
Population trends of penguins in the French Southern Territories
Christophe Barbraud et al.
POLAR BIOLOGY (2020)
Genome-wide analyses reveal drivers of penguin diversification
Juliana A. Vianna et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Morphometric and genetic evidence for four species of gentoo penguin
Joshua Tyler et al.
ECOLOGY AND EVOLUTION (2020)
The Spectre of Too Many Species
Adam D. Leache et al.
SYSTEMATIC BIOLOGY (2019)
Mitogenomes Uncover Extinct Penguin Taxa and Reveal Island Formation as a Key Driver of Speciation
Theresa L. Cole et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
Species limits in butterflies (Lepidoptera: Nymphalidae): reconciling classical taxonomy with the multispecies coalescent
Pavel Matos-Maravi et al.
SYSTEMATIC ENTOMOLOGY (2019)
Genomics overrules mitochondrial DNA, siding with morphology on a controversial case of species delimitation
Carmen del R. Pedraza-Marron et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
A phylogenomic perspective on diversity, hybridization and evolutionary affinities in the stickleback genus Pungitius
Baocheng Guo et al.
MOLECULAR ECOLOGY (2019)
Phylogeography, Population Structure, and Species Delimitation in Rockhopper Penguins (Eudyptes chrysocome and Eudyptes moseleyi)
Herman L. Mays et al.
JOURNAL OF HEREDITY (2019)
Speciation across mountains: Phylogenomics, species delimitation and taxonomy of the Liolaemus leopardinus Glade (Squamata, Liolaemidae)
Damien Esquerre et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)
More than the eye can see: Genomic insights into the drivers of genetic differentiation in Royal/Macaroni penguins across the Southern Ocean
Maria Jose Frugone et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)
Receding ice drove parallel expansions in Southern Ocean penguins
Theresa L. Cole et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
UFBoot2: Improving the Ultrafast Bootstrap Approximation
Diep Thi Hoang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
RADpainter and fineRADstructure Population Inference from RADseq Data
Milan Malinsky et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Cryptic species as a window into the paradigm shift of the species concept
Cene Fiser et al.
MOLECULAR ECOLOGY (2018)
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Shannon J. O'Leary et al.
MOLECULAR ECOLOGY (2018)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Comparative population genomics reveals key barriers to dispersal in Southern Ocean penguins
Gemma V. Clucas et al.
MOLECULAR ECOLOGY (2018)
Contrasting phylogeographic pattern among Eudyptes penguins around the Southern Ocean
M. J. Frugone et al.
SCIENTIFIC REPORTS (2018)
The computer program STRUCTURE for assigning individuals to populations: easy to use but easier to misuse
Jinliang Wang
MOLECULAR ECOLOGY RESOURCES (2017)
Marked phylogeographic structure of Gentoo penguin reveals an ongoing diversification process along the Southern Ocean
Juliana A. Vianna et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Multispecies coalescent delimits structure, not species
Jeet Sukumaran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Does genetic structure reflect differences in non-breeding movements? A case study in small, highly mobile seabirds
Petra Quillfeldt et al.
BMC EVOLUTIONARY BIOLOGY (2017)
Individual repeatability in laying behaviour does not support the migratory carry-over effect hypothesis of egg-size dimorphism in Eudyptes penguins
Kyle W. Morrison
JOURNAL OF AVIAN BIOLOGY (2016)
Conservation genomics of natural and managed populations: building a conceptual and practical framework
Laura Marilyn Benestan et al.
MOLECULAR ECOLOGY (2016)
Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST
Michael C. Whitlock et al.
AMERICAN NATURALIST (2015)
Bayesian species delimitation combining multiple genes and traits in a unified framework
Claudia Solis-Lemus et al.
EVOLUTION (2015)
The Avian Hybrids Project: gathering the scientific literature on avian hybridization
Jente Ottenburghs et al.
IBIS (2015)
Differentially expressed genes match bill morphology and plumage despite largely undifferentiated genomes in a Holarctic songbird
Nicholas A. Mason et al.
MOLECULAR ECOLOGY (2015)
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K
Naama M. Kopelman et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality
Zhian N. Kamvar et al.
FRONTIERS IN GENETICS (2015)
Pollution, habitat loss, fishing, and climate change as critical threats to penguins
Phil N. Trathan et al.
CONSERVATION BIOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Coalescent Modelling Suggests Recent Secondary-Contact of Cryptic Penguin Species
Stefanie Grosser et al.
PLOS ONE (2015)
Population dynamics of Eastern Rockhopper Penguins on Campbell Island in relation to sea surface temperature 1942-2012: current warming hiatus pauses a long-term decline
Kyle W. Morrison et al.
POLAR BIOLOGY (2015)
circlize implements and enhances circular visualization in R
Zuguang Gu et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
The application of species criteria in avian taxonomy and its implications for the debate over species concepts
George Sangster
BIOLOGICAL REVIEWS (2014)
The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle
Phillip Q. Spinks et al.
MOLECULAR ECOLOGY (2014)
Global Biodiversity Assessment and Hyper-Cryptic Species Complexes: More Than One Species of Elephant in the Room?
Mark Adams et al.
SYSTEMATIC BIOLOGY (2014)
Species Delimitation using Genome-Wide SNP Data
Adam D. Leache et al.
SYSTEMATIC BIOLOGY (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Zhian N. Kamvar et al.
PEERJ (2014)
Stacks: an analysis tool set for population genomics
Julian Catchen et al.
MOLECULAR ECOLOGY (2013)
Integrating phylogenetics, phylogeography and population genetics through genomes and evolutionary theory
Asher D. Cutter
MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)
ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers
Francois Besnier et al.
PLOS ONE (2013)
Increasing trend in the number of Southern Rockhopper Penguins (Eudyptes c. chrysocome) breeding at the Falkland Islands
A. M. M. Baylis et al.
POLAR BIOLOGY (2013)
An overview of STRUCTURE: applications, parameter settings, and supporting software
Liliana Porras-Hurtado et al.
Frontiers in Genetics (2013)
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
H. E. L. Lischer et al.
BIOINFORMATICS (2012)
A high-performance computing toolset for relatedness and principal component analysis of SNP data
Xiuwen Zheng et al.
BIOINFORMATICS (2012)
Implications of different species concepts for conserving biodiversity
Richard Frankham et al.
BIOLOGICAL CONSERVATION (2012)
The biogeography of Gentoo Penguins (Pygoscelis papua)
Marc de Dinechin et al.
CANADIAN JOURNAL OF ZOOLOGY (2012)
Coexistence of oceanic predators on wintering areas explained by population-scale foraging segregation in space or time
Jean-Baptiste Thiebot et al.
ECOLOGY (2012)
Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
David Bryant et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
N. Puillandre et al.
MOLECULAR ECOLOGY (2012)
The biogeography of mitochondrial and nuclear discordance in animals
David P. L. Toews et al.
MOLECULAR ECOLOGY (2012)
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Brant K. Peterson et al.
PLOS ONE (2012)
Coalescent-based species delimitation in an integrative taxonomy
Matthew K. Fujita et al.
TRENDS IN ECOLOGY & EVOLUTION (2012)
The genomics of speciation-with-gene-flow
Jeffrey L. Feder et al.
TRENDS IN GENETICS (2012)
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
Dent A. Earl et al.
CONSERVATION GENETICS RESOURCES (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Inter-population segregation in the wintering areas of macaroni penguins
Jean-Baptiste Thiebot et al.
MARINE ECOLOGY PROGRESS SERIES (2011)
DensiTree: making sense of sets of phylogenetic trees
Remco R. Bouckaert
BIOINFORMATICS (2010)
Breeding success of Northern Rockhopper Penguins (Eudyptes moseleyi) at Gough Island, South Atlantic Ocean
J. W. Wilson et al.
EMU (2010)
Bayesian species delimitation using multilocus sequence data
Ziheng Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Population trends and conservation status of the Northern Rockhopper Penguin Eudyptes moseleyi at Tristan da Cunha and Gough Island
Richard Cuthbert et al.
BIRD CONSERVATION INTERNATIONAL (2009)
HETEROSPECIFIC PAIRING AND HYBRIDIZATION BETWEEN WILD HUMBOLDT AND MAGELLANIC PENGUINS IN SOUTHERN CHILE
Alejandro Simeone et al.
CONDOR (2009)
Speciation chronology of rockhopper penguins inferred from molecular, geological and palaeoceanographic data
Marc de Dinechin et al.
JOURNAL OF BIOGEOGRAPHY (2009)
Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008
Scott Edwards et al.
MOLECULAR ECOLOGY (2009)
Divergent selection and heterogeneous genomic divergence
Patrik Nosil et al.
MOLECULAR ECOLOGY (2009)
Diving patterns of breeding female rockhopper penguins (Eudyptes chrysocome): Noir Island, Chile
Andrea Raya Rey et al.
POLAR BIOLOGY (2009)
The seabird paradox: dispersal, genetic structure and population dynamics in a highly mobile, but philopatric albatross species
Emmanuel Milot et al.
MOLECULAR ECOLOGY (2008)
Mitochondrial DNA under siege in avian phylogeography
Robert M. Zink et al.
MOLECULAR ECOLOGY (2008)
Species concepts and species delimitation
Kevin De Queiroz
SYSTEMATIC BIOLOGY (2007)
PLINK: A tool set for whole-genome association and population-based linkage analyses
Shaun Purcell et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
Mattias Jakobsson et al.
BIOINFORMATICS (2007)
Cryptic species as a window on diversity and conservation
David Bickford et al.
TRENDS IN ECOLOGY & EVOLUTION (2007)
Genetic evidence for three species of rockhopper penguins, Eudyptes chrysocome
Jonathan Banks et al.
POLAR BIOLOGY (2006)
Genetic isolation and divergence in sexual traits:: evidence for the northern rockhopper penguin Eudyptes moseleyi being a sibling species
P. Jouventin et al.
MOLECULAR ECOLOGY (2006)
Sequence-based species delimitation for the DNA taxonomy of undescribed insects
Joan Pons et al.
SYSTEMATIC BIOLOGY (2006)
Adaptive linear step-up procedures that control the false discovery rate
Yoav Benjamini et al.
BIOMETRIKA (2006)
The double vocal signature of crested penguins:: is the identity coding system of rockhopper penguins Eudyptes chrysocome due to phylogeny or ecology?
A Searby et al.
JOURNAL OF AVIAN BIOLOGY (2005)
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
G Evanno et al.
MOLECULAR ECOLOGY (2005)
DISTRUCT: a program for the graphical display of population structure
NA Rosenberg
MOLECULAR ECOLOGY NOTES (2004)
The breeding biology and factors affecting reproductive success in rockhopper penguins Eudyptes chrysocome at Macquarie Island
CL Hull et al.
POLAR BIOLOGY (2004)
GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms
PG Meirmans et al.
MOLECULAR ECOLOGY NOTES (2004)
The impact of species concept on biodiversity studies
PM Agapow et al.
QUARTERLY REVIEW OF BIOLOGY (2004)
Decrease in numbers of the eastern rockhopper penguin Eudyptes chrysocome filholi at Marion Island, 1994/95-2002/03
RJM Crawford et al.
AFRICAN JOURNAL OF MARINE SCIENCE (2003)
Recent trends in diet composition and productivity of gentoo, magellanic and rockhopper penguins in the Falkland Islands
AP Clausen et al.
AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS (2002)
Global relationships amongst black-browed and grey-headed albatrosses: analysis of population structure using mitochondrial DNA and microsatellites
TM Burg et al.
MOLECULAR ECOLOGY (2001)
The genic view of the process of speciation
CI Wu
JOURNAL OF EVOLUTIONARY BIOLOGY (2001)
A likelihood approach to estimating phylogeny from discrete morphological character data
PO Lewis
SYSTEMATIC BIOLOGY (2001)