4.7 Article

DeepnsSNPs: Accurate prediction of non-synonymous single-nucleotide polymorphisms by combining multi-scale convolutional neural network and residue environment information

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Deep convolutional neural networks for accurate somatic mutation detection

Sayed Mohammad Ebrahim Sahraeian et al.

NATURE COMMUNICATIONS (2019)

Review Pharmacology & Pharmacy

Novel avenues for drug discovery in diabetic kidney disease

Matthew D. Breyer et al.

EXPERT OPINION ON DRUG DISCOVERY (2018)

Review Mathematical & Computational Biology

Rare Diseases: Drug Discovery and Informatics Resource

Mingzhu Zhao et al.

INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES (2018)

Article Biochemistry & Molecular Biology

Effects of mutants in bHLH region on structure stability and protein-DNA binding energy in DECs

Yi Kong et al.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2017)

Article Biochemical Research Methods

Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs

Jun Hu et al.

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2017)

Article Biochemical Research Methods

3D deep convolutional neural networks for amino acid environment similarity analysis

Wen Torng et al.

BMC BIOINFORMATICS (2017)

Article Biochemistry & Molecular Biology

Computational approaches for predicting mutant protein stability

Shweta Kulshreshtha et al.

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2016)

Article Computer Science, Artificial Intelligence

Protein-protein interaction sites prediction by ensembling SVM and sample-weighted random forests

Zhi-Sen Wei et al.

NEUROCOMPUTING (2016)

Article Biochemical Research Methods

DANN: a deep learning approach for annotating the pathogenicity of genetic variants

Daniel Quang et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

mCSM: predicting the effects of mutations in proteins using graph-based signatures

Douglas E. V. Pires et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble

Dong-Jun Yu et al.

BMC BIOINFORMATICS (2014)

Article Genetics & Heredity

A general framework for estimating the relative pathogenicity of human genetic variants

Martin Kircher et al.

NATURE GENETICS (2014)

Article Biochemical Research Methods

PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations

Jaroslav Bendl et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Review Multidisciplinary Sciences

The causes and consequences of genetic heterogeneity in cancer evolution

Rebecca A. Burrell et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

SOMPNN: an efficient non-parametric model for predicting transmembrane helices

Dong-Jun Yu et al.

AMINO ACIDS (2012)

Article Biochemical Research Methods

Bioinformatics for personal genome interpretation

Emidio Capriotti et al.

BRIEFINGS IN BIOINFORMATICS (2012)

Article Genetics & Heredity

PON-P: Integrated Predictor for Pathogenicity of Missense Variants

Ayodeji Olatubosun et al.

HUMAN MUTATION (2012)

Article Biochemistry & Molecular Biology

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

Ambrish Roy et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Sann: Solvent accessibility prediction of proteins by nearest neighbor method

Keehyoung Joo et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

SDM-a server for predicting effects of mutations on protein stability and malfunction

Catherine L. Worth et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Predicting the functional impact of protein mutations: application to cancer genomics

Boris Reva et al.

NUCLEIC ACIDS RESEARCH (2011)

Letter Biochemical Research Methods

A method and server for predicting damaging missense mutations

Ivan A. Adzhubei et al.

NATURE METHODS (2010)

Article Biochemical Research Methods

Automated inference of molecular mechanisms of disease from amino acid substitutions

Biao Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Protein structure prediction: when is it useful?

Yang Zhang

CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

SNAP: predict effect of non-synonymous polymorphisms on function

Yana Bromberg et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Automation & Control Systems

Receiver operating characteristics curves and related decision measures: A tutorial

CD Brown et al.

CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS (2006)

Article Biochemistry & Molecular Biology

The Universal Protein Resource (UniProt): an expanding universe of protein information

Cathy H. Wu et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Genetics & Heredity

The exchangeability of amino acids in proteins

LY Yampolsky et al.

GENETICS (2005)

Article Biochemistry & Molecular Biology

nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms

L Bao et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

The DISOPRED server for the prediction of protein disorder

JJ Ward et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

The ASTRAL Compendium in 2004

JM Chandonia et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Coding sing le-nucleotide polymorphisms associated with complex vs. Mendelian disease: Evolutionary evidence for differences in molecular effects

PD Thomas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

SIFT: predicting amino acid changes that affect protein function

PC Ng et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Prediction of disordered regions in proteins from position specific score matrices

DT Jones et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Human non-synonymous SNPs: server and survey

V Ramensky et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

AA Schäffer et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemical Research Methods

Intrinsically disordered protein

AK Dunker et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2001)

Article Biochemical Research Methods

The PSIPRED protein structure prediction server

LJ McGuffin et al.

BIOINFORMATICS (2000)

Article Biochemistry & Molecular Biology

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

A Bairoch et al.

NUCLEIC ACIDS RESEARCH (2000)