☆ 4.8 Review

Mass Spectrometry-Based Techniques to Elucidate the Sugar Code

CHEMICAL REVIEWS (2022)

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Review Spectroscopy

Ion mobility mass spectrometry in the omics era: Challenges and opportunities for metabolomics and lipidomics

Giuseppe Paglia et al.

Summary: Researchers are utilizing ion mobility mass spectrometry (IM-MS) for metabolomics and lipidomics applications, which offers advantages such as measuring collision cross-section values, improving peak capacity and signal-to-noise ratio, and coupling with various fragmentation modes. These advancements provide a more robust tool for identification, quantification, and structural characterization in the field.

MASS SPECTROMETRY REVIEWS (2022)

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Review Cell Biology

Analysis of the Glycosaminoglycan Chains of Proteoglycans

Yuefan Song et al.

Summary: Glycosaminoglycans are charged macromolecules found in animal tissues and categorized into four families based on their component sugars. They regulate biological pathways through interactions with protein ligands, but detailed structural information on GAG chains lags behind. Progress in mass spectrometry and other structural analysis tools is helping advance understanding of GAG-ligand interactions.

JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY (2021)

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Review Cell Biology

Glycosaminoglycan-Protein Interactions: The First Draft of the Glycosaminoglycan Interactome

Sylvain D. Vallet et al.

Summary: GAGs play crucial roles in interacting with various biomolecules in different physiological and pathological contexts. Researchers have provided an overview of GAG-protein interactions and presented a comprehensive network composed of 832 biomolecules (827 proteins and five GAGs) and 932 protein-GAG interactions. This contextualized interactome could potentially identify druggable GAG-protein interactions for therapeutic purposes.

JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY (2021)

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Article Chemistry, Multidisciplinary

Reactivity-Stereoselectivity Mapping for the Assembly of Mycobacterium marinum Lipooligosaccharides

Thomas Hansen et al.

Summary: By systematically studying the reactivity-stereoselectivity relationships of caryophyllose donor and acceptor glycosides, using experimental and computational techniques, we were able to design carbohydrate building blocks with the necessary properties to assemble mycobacterial lipooligosaccharide fragments of M. marinum.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2021)

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Article Chemistry, Multidisciplinary

Identification of Isomeric N-Glycans by Conformer Distribution Fingerprinting using Ion Mobility Mass Spectrometry

Javier Sastre Torano et al.

Summary: This study introduces a method to identify isomeric N-glycans based on gas phase conformer distributions, using well-defined synthetic glycans for systematic research and calculating CD fingerprints through molecular dynamics simulations to establish a library for structure identification.

CHEMISTRY-A EUROPEAN JOURNAL (2021)

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Review Chemistry, Analytical

Glycomics and glycoproteomics: Approaches to address isomeric separation of glycans and glycopeptides

Cristian D. Gutierrez Reyes et al.

Summary: The glycome changes of human proteins and cells are associated with the progression of various diseases. However, the lack of analytical techniques with sufficient resolution power remains a challenge for the accurate characterization of isomeric glycan moieties in different diseases.

JOURNAL OF SEPARATION SCIENCE (2021)

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Review Biochemical Research Methods

Developments in Mass Spectrometry for Glycosaminoglycan Analysis: A Review

Lauren E. Pepi et al.

Summary: This review discusses recent advancements in mass spectrometry (MS) for the analysis of glycosamino-glycans (GAGs). GAGs play key roles in various biological functions and have complex structural features, making their analysis challenging. However, improvements in MS techniques have significantly enhanced the precision and efficiency of structural characterization of GAGs.

MOLECULAR & CELLULAR PROTEOMICS (2021)

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Review Biochemical Research Methods

A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based Glycoproteomics

Nicholas M. Riley et al.

Summary: Glycosylation, a prevalent but heterogeneous modification in molecular biology, has broad implications. The choice of enrichment strategy significantly impacts experimental outcomes in glycoproteomics research, which continues to gain interest with advancements in mass spectrometry instrumentation and software.

MOLECULAR & CELLULAR PROTEOMICS (2021)

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Review Chemistry, Analytical

Mass Spectrometry-Based Structural Virology

Tobias P. Worner et al.

ANALYTICAL CHEMISTRY (2021)

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Article Biochemical Research Methods

Characterization of defined sulfated heparin-like oligosaccharides by electrospray ionization ion trap mass spectrometry

Katharina Lemmnitzer et al.

Summary: Glycosaminoglycans (GAG) are major components of the extracellular matrix, with sulfation playing a key role in mediating their binding with mediators. Natural sources of GAG are heterogeneous in terms of sulfation patterns and molecular weight, leading to contamination risks, which has sparked interest in careful characterization and synthetic alternatives. Structural characterization of sulfated GAG analogues is challenging due to sulfate loss during ionization, with optimized conditions enabling the gentle and fast mass spectrometry characterization of (fully) sulfated, artificial GAG-like oligosaccharides with minimized sulfate loss.

JOURNAL OF MASS SPECTROMETRY (2021)

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Article Biochemical Research Methods

Linkage Memory in Underivatized Protonated Carbohydrates

Abhigya Mookherjee et al.

Summary: Carbohydrates, as a complex class of biomolecules, exhibit multiple conformations and are influenced by their precursor's linkage configuration. Mass spectrometry analysis reveals that protonated carbohydrate fragment ions retain linkage memory, providing insights into their intact precursor's structure.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2021)

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Article Multidisciplinary Sciences

The 3-O-sulfation of heparan sulfate modulates protein binding and lyase degradation

Pradeep Chopra et al.

Summary: This study introduced a modular synthetic approach to create diverse HS oligosaccharides with or without 3-OS. These oligosaccharides were used to examine ligand requirements for HS-binding proteins on a glycan microarray. The study also found that 3-OS influenced cleavage by lyase II while 2-OS only affected digestion by lyase I, showing varied substrate specificities among heparin lyases.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

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Article Biochemical Research Methods

Site-Specific N-Linked Glycosylation Analysis of Human Carcinoembryonic Antigen by Sheathless Capillary Electrophoresis-Tandem Mass Spectrometry

Laura Pont et al.

Summary: This study found a high degree of heterogeneity in N-glycosylation of CEA, both within individual sites and between different sites. Notable differences were observed in branching, bisection, sialylation, and fucosylation on certain N-glycosylation sites between primary adenocarcinoma and metastatic tumors. These findings may contribute to improved diagnostics and monitoring of colorectal cancer progression and recurrence.

JOURNAL OF PROTEOME RESEARCH (2021)

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Article Multidisciplinary Sciences

Deep learning the collisional cross sections of the peptide universe from a million experimental values

Florian Meier et al.

Summary: Researchers have developed a deep learning model that can accurately predict peptide collisional cross section (CCS) values, based on a large dataset of over one million data points. In addition to peptide sequences, hydrophobicity, proportion of prolines, and position of histidines also contribute to the prediction of CCS values. This study lays the foundation for predicting CCS values and advancing proteomics workflows.

NATURE COMMUNICATIONS (2021)

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Article Multidisciplinary Sciences

Unravelling the structural complexity of glycolipids with cryogenic infrared spectroscopy

Carla Kirschbaum et al.

Summary: This study investigates isomerism in immunologically relevant glycolipids using cryogenic gas-phase infrared spectroscopy, and shows that their structural features can be accurately resolved based on a narrow spectral fingerprint region.

NATURE COMMUNICATIONS (2021)

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Article Chemistry, Analytical

In-Depth Structural Characterization and Quantification of Cerebrosides and Glycosphingosines with Gas-Phase Ion Chemistry

Hsi-Chun Chao et al.

Summary: This work presents a new strategy combining shotgun tandem mass spectrometry with gas-phase ion chemistry to achieve differentiation and quantification of isomeric cerebrosides and glycosphingosines. Collision-induced dissociation of charge-inverted complex cations results in significant spectral differences, allowing for isomer distinction. A quantification strategy using normalized percent area of selected diagnostic ions is described for both cerebrosides and glycosphingosines.

ANALYTICAL CHEMISTRY (2021)

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Article Chemistry, Analytical

Anomeric Retention of Carbohydrates in Multistage Cyclic Ion Mobility (IMSn): De Novo Structural Elucidation of Enzymatically Produced Mannosides

Simon Ollivier et al.

Summary: Carbohydrates are complex structures with different levels of isomerism, notably the anomerism of the glycosidic bond, which are still challenging analysts today. Recent research has shown that anomerism can be preserved upon gas-phase fragmentation and high-resolution ion mobility (IMS) can distinguish anomers. The study demonstrates that high-resolution IMS and IMSn can be used to characterize the intrachain anomerism in tri- and tetrasaccharides in a biological medium, providing the first evidence that a single carbohydrate-active enzyme can synthesize both alpha- and beta-glycosidic linkages.

ANALYTICAL CHEMISTRY (2021)

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Review Biochemistry & Molecular Biology

Current state on the enzymatic synthesis of glycosaminoglycans

Johannes Gottschalk et al.

Summary: Glycosaminoglycans (GAGs) are linear anionic polysaccharides with specific sulfation patterns, and recent research has focused on tailored production strategies and enzyme cascades to overcome challenges such as contamination and uncontrolled sulfation patterns. Despite advancements in chemoenzymatic synthesis, the complex production of GAGs remains a challenging field of research.

CURRENT OPINION IN CHEMICAL BIOLOGY (2021)

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Article Chemistry, Physical

Chondroitin Sulfate Disaccharides in the Gas Phase: Differentiation and Conformational Constraints

Maike Lettow et al.

Summary: Glycosaminoglycans (GAGs) play vital roles in biological processes and their characterization, particularly chondroitin and dermatan sulfate, poses challenges due to their varying sulfation patterns. Combining mass spectrometry and cryogenic infrared spectroscopy, researchers have identified that the degree and position of sulfate groups impact the conformational landscape in gas phase, providing insights for future sequencing approaches.

JOURNAL OF PHYSICAL CHEMISTRY A (2021)

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Article Biochemical Research Methods

Resolving Power and Collision Cross Section Measurement Accuracy of a Prototype High-Resolution Ion Mobility Platform Incorporating Structures for Lossless Ion Manipulation

Jody C. May et al.

Summary: The SLIM IM platform demonstrated high-resolution separations for a range of isomeric and isobaric compounds, achieving resolving powers exceeding 300 and enabling the separation of peaks as close as 0.6%. Low CCS measurement biases (<0.5%) were obtained under high resolving power conditions, making it suitable for global untargeted applications requiring broadband HRIM separations.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2021)

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Article Biochemical Research Methods

Gangliosides of Human Glioblastoma Multiforme: A Comprehensive Mapping and Structural Analysis by Ion Mobility Tandem Mass Spectrometry

Mirela Sarbu et al.

Summary: GBM is a malignant and highly aggressive brain tumor with aberrant cell-surface glycosylation patterns in nearly all tumor cells. Profiling of ganglioside mixtures from GBM specimens revealed over 160 distinct components, dominated by GD3 and GT1 forms. The presence of GT1c(d18:1/24:1) was identified as a potential GBM marker for the first time using high performance ion mobility separation mass spectrometry.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2021)

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Review Spectroscopy

ANALYSIS OF CARBOHYDRATES AND GLYCOCONJUGATES BY MATRIX-ASSISTED LASER DESORPTION/IONIZATION MASS SPECTROMETRY: AN UPDATE FOR 2015-2016

David J. Harvey

Summary: This review is the ninth update on the application of MALDI mass spectrometry in the analysis of carbohydrates and glycoconjugates, covering literature up to the end of 2016. It includes general aspects of the MALDI process, appropriate analysis methods, and applications in medical and industrial fields. The review highlights the continuous advancement of the technique and its expanding range of applications.

MASS SPECTROMETRY REVIEWS (2021)

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Review Biochemical Research Methods

Advanced tandem mass spectrometry in metabolomics and lipidomics-methods and applications

Sven Heiles

Summary: Metabolomics and lipidomics are driving forces in the omics era, with tandem mass spectrometry methods playing a crucial role in characterizing the structural details of metabolites and lipids. Recent advancements in alternative tandem MS methodologies aim to provide full structural characterization of these compounds. The review critically examines the principles, capabilities, drawbacks, and initial applications of these advanced tandem mass spectrometry strategies in the fields of metabolomics and lipidomics.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2021)

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Article Biochemical Research Methods

Investigation of the Experimental Parameters of Ultraviolet Photodissociation for the Structural Characterization of Chondroitin Sulfate Glycosaminoglycan Isomers

Lauren E. Pepi et al.

Summary: This study investigates the potential of UVPD in distinguishing chondroitin sulfate GAG epimers and the impact of experimental parameters on this differentiation. Results suggest that UVPD has promising capabilities in differentiating GAG structures, particularly in characterizing 4-O sulfation in CS-A GAGs.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2021)

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Article Chemistry, Analytical

A new approach for identifying positional isomers of glycans cleaved from monoclonal antibodies

Irina Dyukova et al.

Summary: Glycosylation patterns in monoclonal antibodies can vary significantly between different host cell types, affecting the safety, efficacy, and immunogenicity of the antibodies. This study demonstrates the potential of high-resolution ion mobility combined with cryogenic infrared spectroscopy in distinguishing isomeric glycans with different terminal galactose positions, which is critical for ensuring antibody quality. Additionally, the impact of host cell lines on the IgG G1F glycan profile at the isomer level was illustrated in this work.

ANALYST (2021)

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Article Biochemical Research Methods

What Are We Missing by Using Hydrophilic Enrichment? Improving Bacterial Glycoproteome Coverage Using Total Proteome and FAIMS Analyses

Ameera Raudah Ahmad Izaham et al.

Summary: This study explores alternative approaches to studying bacterial glycoproteomes without relying on HILIC enrichment. By analyzing Burkholderia species, it was found that short aliphatic O-linked glycopeptides are absent in HILIC enrichments but can be identified in whole proteome samples. High-field asymmetric waveform ion mobility spectrometry (FAIMS) fractionation allowed for the enrichment of these glycopeptides from complex samples, expanding the observable glycoproteome of Burkholderia species by at least 25%. Additionally, the applicability of FAIMS for glycopeptide enrichment was demonstrated with N-linked glycopeptides from Campylobacter fetus subsp. fetus.

JOURNAL OF PROTEOME RESEARCH (2021)

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Review Spectroscopy

The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

Lindsay K. Pino et al.

MASS SPECTROMETRY REVIEWS (2020)

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Review Chemistry, Multidisciplinary

Chemoenzymatic Synthesis of Glycosaminoglycans

Xing Zhang et al.

ACCOUNTS OF CHEMICAL RESEARCH (2020)

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Article Chemistry, Analytical

Analysis of glycopeptide biomarkers by on-line TiO2 solid-phase extraction capillary electrophoresis-mass spectrometry

Montserrat Mancera-Arteu et al.

TALANTA (2020)

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Article Biochemical Research Methods

IR action spectroscopy of glycosaminoglycan oligosaccharides

Maike Lettow et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Toward Automatic and Comprehensive Glycan Characterization by Online PGC-LC-EED MS/MS

Juan Wei et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Combining Cryogenic Infrared Spectroscopy with Selective Enzymatic Cleavage for Determining Glycan Primary Structure

Irina Dyukova et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Multidisciplinary

Remote Participation during Glycosylation Reactions of Galactose Building Blocks: Direct Evidence from Cryogenic Vibrational Spectroscopy

Mateusz Marianski et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)

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Review Chemistry, Multidisciplinary

Ultraviolet Photodissociation Mass Spectrometry for Analysis of Biological Molecules

Jennifer S. Brodbelt et al.

CHEMICAL REVIEWS (2020)

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Article Biochemical Research Methods

Parallel Determination of Polypeptide and Oligosaccharide Connectivities by Energy-Resolved Collison-Induced Dissociation of Protonated O-Glycopeptides Derived from Nonspecific Proteolysis

Maia Kelly et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2020)

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Review Spectroscopy

TUTORIAL: ION ACTIVATION IN TANDEM MASS SPECTROMETRY USING ULTRA-HIGH RESOLUTION INSTRUMENTATION

Parisa Bayat et al.

MASS SPECTROMETRY REVIEWS (2020)

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Article Multidisciplinary Sciences

Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts

Catherine G. Vasilopoulou et al.

NATURE COMMUNICATIONS (2020)

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Article Chemistry, Analytical

Using SLIM-Based IMS-IMS Together with Cryogenic Infrared Spectroscopy for Glycan Analysis

Priyanka Bansal et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Multidisciplinary

Resolving Sphingolipid Isomers Using Cryogenic Infrared Spectroscopy

Carla Kirschbaum et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)

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Article Biochemistry & Molecular Biology

Mass spectrometry in combination with a chiral column and multichannel-MRM allows comprehensive analysis of glycosphingolipid molecular species from mouse brain

Yuko Fujiwara et al.

CARBOHYDRATE RESEARCH (2020)

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Article Chemistry, Physical

Chiral and Isomeric Discrimination of Chiral Molecular Ions by Cold Ion Circular Dichroism Spectroscopy

Han Jun Eun et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2020)

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Article Multidisciplinary Sciences

Shotgun ion mobility mass spectrometry sequencing of heparan sulfate saccharides

Rebecca L. Miller et al.

NATURE COMMUNICATIONS (2020)

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Article Multidisciplinary Sciences

Characterization of glycosyl dioxolenium ions and their role in glycosylation reactions

Thomas Hansen et al.

NATURE COMMUNICATIONS (2020)

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Article Biochemical Research Methods

Identification of glycan branching patterns using multistage mass spectrometry with spectra tree analysis

Hui Wang et al.

JOURNAL OF PROTEOMICS (2020)

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Article Chemistry, Multidisciplinary

How General Is Anomeric Retention during Collision-Induced Dissociation of Glycans?

Robert P. Pellegrinelli et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2020)

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Review Spectroscopy

Negative ion mass spectrometry for the analysis of N-linked glycans

David J. Harvey

MASS SPECTROMETRY REVIEWS (2020)

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Review Chemistry, Multidisciplinary

Glycomics studies using sialic acid derivatization and mass spectrometry

Noortje de Haan et al.

NATURE REVIEWS CHEMISTRY (2020)

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Article Chemistry, Analytical

Isomeric Separation of N-Glycopeptides Derived from Glycoproteins by Porous Graphitic Carbon (PGC) LC-MS/MS

Rui Zhu et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Amplification and Preparation of Cellular O-Glycomes for Functional Glycomics

Zhonghua Li et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Cryogenic Infrared Spectroscopy Reveals Structural Modularity in the Vibrational Fingerprints of Heparan Sulfate Diastereomers

Maike Lettow et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Physical

The Impact of Leaving Group Anomericity on the Structure of Glycosyl Cations of Protected Galactosides

Kim Greis et al.

CHEMPHYSCHEM (2020)

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Review Biochemistry & Molecular Biology

Mass spectrometry hybridized with gas-phase InfraRed spectroscopy for glycan sequencing

Christopher John Gray et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2020)

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Article Chemistry, Physical

Cryogenic Ion Spectroscopy of a Singly Protonated Peptide DYYVVR: Locating Phosphorylation Sites of a Kinase Domain

Jang Han Kwon et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2020)

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Article Biochemical Research Methods

Ultraviolet photodissociation of fondaparinux generates signature antithrombin-like 3-O-sulfated-GlcNS3S6S-monosaccharide fragment (Y-3/C-3)

Adam M. Hawkridge et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Accurate Identification of Isomeric Glycans by Trapped Ion Mobility Spectrometry-Electronic Excitation Dissociation Tandem Mass Spectrometry

Juan Wei et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Differentiation and Quantification of Diastereomeric Pairs of Glycosphingolipids Using Gas-Phase Ion Chemistry

Hsi-Chun Chao et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Identification and Quantification of Any Isoforms of Carbohydrates by 2D UV-MS Fingerprinting of Cold Ions

Erik Saparbaev et al.

ANALYTICAL CHEMISTRY (2020)

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Article Biochemical Research Methods

Optimal Dissociation Methods Differ for N- and O-Glycopeptides

Nicholas M. Riley et al.

JOURNAL OF PROTEOME RESEARCH (2020)

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Article Biochemical Research Methods

High-Resolution Ion Mobility Separations of Isomeric Glycoforms with Variations on the Peptide and Glycan Levels

Pratima Pathak et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2020)

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Article Multidisciplinary Sciences

Imaging single glycans

X. Wu et al.

NATURE (2020)

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Article Multidisciplinary Sciences

Mass-resolved electronic circular dichroism ion spectroscopy

Steven Daly et al.

SCIENCE (2020)

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Article Chemistry, Organic

Modular Synthesis of Heparan Sulfate Oligosaccharides Having N-Acetyl and N-Sulfate Moieties

Lifeng Sun et al.

JOURNAL OF ORGANIC CHEMISTRY (2020)

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Review Biochemical Research Methods

Current Methods for the Characterization of O-Glycans

Hayden Wilkinson et al.

JOURNAL OF PROTEOME RESEARCH (2020)

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Article Biochemical Research Methods

Structural Characterization of Sulfated Glycosaminoglycans Using Charge-Transfer Dissociation

Lauren E. Pepi et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2020)

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Article Chemistry, Organic

Direct Experimental Characterization of the Ferrier Glycosyl Cation in the Gas Phase

Kim Greis et al.

ORGANIC LETTERS (2020)

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Article Chemistry, Analytical

Utility of Ion-Mobility Spectrometry for Deducing Branching of Multiply Charged Glycans and Glycopeptides in a High-Throughput Positive ion LC-FLR-IMS-MS Workflow

Edward G. Pallister et al.

ANALYTICAL CHEMISTRY (2020)

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Article Chemistry, Analytical

Analyzing glycans cleaved from a biotherapeutic protein using ultrahigh-resolution ion mobility spectrometry together with cryogenic ion spectroscopy

Natalia Yalovenko et al.

ANALYST (2020)

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Review Oncology

Targeting Glycosylation: A New Road for Cancer Drug Discovery

Ana Filipa Costa et al.

TRENDS IN CANCER (2020)

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Article Chemistry, Analytical

Evaluation of top-down mass spectrometry and ion-mobility spectroscopy as a means of mapping protein-binding motifs within heparin chains

Yunlong Zhao et al.

ANALYST (2020)

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Article Chemistry, Physical

Automated exploration of the low-energy chemical space with fast quantum chemical methods

Philipp Pracht et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2020)

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Article Biochemical Research Methods

The role of the mobile proton in fucose migration

Maike Lettow et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2019)

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Article Chemistry, Analytical

Combining Ultrahigh-Resolution Ion-Mobility Spectrometry with Cryogenic Infrared Spectroscopy for the Analysis of Glycan Mixtures

Ahmed Ben Faleh et al.

ANALYTICAL CHEMISTRY (2019)

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Article Chemistry, Multidisciplinary

Heavy Heparin: A Stable Isotope-Enriched, Chemoenzymatically-Synthesized, Poly-Component Drug

Brady F. Cress et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

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Article Chemistry, Physical

GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions

Christoph Bannwarth et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2019)

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Review Spectroscopy

Recommendations for reporting ion mobility Mass Spectrometry measurements

Valerie Gabelica et al.

MASS SPECTROMETRY REVIEWS (2019)

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Review Urology & Nephrology

Glycosylation in health and disease

Colin Reily et al.

NATURE REVIEWS NEPHROLOGY (2019)

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Article Biochemical Research Methods

Separation of biologically relevant isomers on an Orbitrap mass spectrometer using high-resolution drift tube ion mobility and varied drift gas mixtures

Julia L. Kaszycki et al.

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Ion mobility conformational lipid atlas for high confidence lipidomics

Katrina L. Leaptrot et al.

NATURE COMMUNICATIONS (2019)

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Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis

Nicholas M. Riley et al.

NATURE COMMUNICATIONS (2019)

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Review Biochemical Research Methods

Ultra-high-resolution ion mobility spectrometry-current instrumentation, limitations, and future developments

Ansgar T. Kirk et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2019)

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Article Chemistry, Analytical

Structural Characterization of Glycosaminoglycan Carbohydrates Using Ultraviolet Photodissociation

Dustin R. Klein et al.

ANALYTICAL CHEMISTRY (2019)

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Article Chemistry, Analytical

A Cyclic Ion Mobility-Mass Spectrometry System

Kevin Giles et al.

ANALYTICAL CHEMISTRY (2019)

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Article Chemistry, Multidisciplinary

Carbohydrate Self-Assembly at Surfaces: STM Imaging of Sucrose Conformation and Ordering on Cu(100)

Sabine Abb et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

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Article Chemistry, Multidisciplinary

Interplay of H-Bonds with Aromatics in Isolated Complexes Identifies Isomeric Carbohydrates

Erik Saparbaev et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

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Article Chemistry, Multidisciplinary

Furanosyl Oxocarbenium Ion Conformational Energy Landscape Maps as a Tool to Study the Glycosylation Stereoselectivity of 2-Azidofuranoses, 2-Fluorofuranoses and Methyl Furanosyl Uronates

Stefan van der Vorm et al.

CHEMISTRY-A EUROPEAN JOURNAL (2019)

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Article Biochemical Research Methods

Cyclic Ion Mobility Mass Spectrometry Distinguishes Anomers and Open-Ring Forms of Pentasaccharides

Jakub Ujma et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2019)

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Differential Isotope Labeling by Permethylation and Reversed-Phase Liquid Chromatography-Mass Spectrometry for Relative Quantification of Intact Neutral Glycolipids in Mammalian Cells

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Ion-Mobility Spectrometry Can Assign Exact Fucosyl Positions in Glycans and Prevent Misinterpretation of Mass-Spectrometry Data After Gas-Phase Rearrangement

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Cryogenic IR spectroscopy combined with ion mobility spectrometry for the analysis of human milk oligosaccharides

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Fucose Migration in Intact Protonated Glycan Ions: A Universal Phenomenon in Mass Spectrometry

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Isomer Information from Ion Mobility Separation of High-Mannose Glycan Fragments

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Collision Cross Sections and Ion Mobility Separation of Fragment Ions from Complex N-Glycans

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Discrimination of Isomers of Released N- and O-Glycans Using Diagnostic Product Ions in Negative Ion PGC-LC-ESI-MS/MS

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Higher Energy Collisional Dissociation Mass Spectrometry of Sulfated O-Linked Oligosaccharides

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ELECTRON-BASED FRAGMENTATION METHODS IN MASS SPECTROMETRY: AN OVERVIEW

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Isomeric complexity of glycosylation documented by MSn

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LC-MS/MS analysis of permethylated N-glycans facilitating isomeric characterization

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Reversed-phase separation methods for glycan analysis

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Gas-Phase Analysis of the Complex of Fibroblast GrowthFactor 1 with Heparan Sulfate: A Traveling Wave Ion Mobility Spectrometry (TWIMS) and Molecular Modeling Study

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Negative Electron Transfer Dissociation Sequencing of Increasingly Sulfated Glycosaminoglycan Oligosaccharides on an Orbitrap Mass Spectrometer

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Ion Mobility-Mass Spectrometry Analysis of Serum N-linked Glycans from Esophageal Adenocarcinoma Phenotypes

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Hexuronic Acid Stereochemistry Determination in Chondroitin Sulfate Glycosaminoglycan Oligosaccharides by Electron Detachment Dissociation

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Electron Detachment Dissociation of Underivatized Chloride-Adducted Oligosaccharides

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Ion Mobility Mass Spectrometry for Extracting Spectra of N-Glycans Directly from Incubation Mixtures Following Glycan Release: Application to Glycans from Engineered Glycoforms of Intact, Folded HIV gp120

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Photoinduced Dissociation of Heparin-Derived Oligosaccharides Controlled by Charge Location

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Application of negative ion MS/MS to the identification of N-glycans released from carcinoembryonic antigen cell adhesion molecule 1 (CEACAM1)

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Extracting Both Peptide Sequence and Glycan Structural Information by 157 nm Photodissociation of N-Linked Glycopeptides

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Modular Synthesis of Heparan Sulfate Oligosaccharides for Structure-Activity Relationship Studies

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Wavelength-Tunable Ultraviolet Photodissociation (UVPD) of Heparin-Derived Disaccharides in a Linear Ion Trap

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Electrospray Ionization Quadrupole Ion-Mobility Time-of-Flight Mass Spectrometry as a Tool to Distinguish the Lot-to-Lot Heterogeneity in N-Glycosylation Profile of the Therapeutic Monoclonal Antibody Trastuzumab

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The High Mannose Glycans from Bovine Ribonuclease B Isomer Characterization by Ion Trap MS

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Structural and quantitative analysis of N-linked glycans by matrix-assisted laser desorption ionization and negative ion nanospray mass spectrometry

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Electron detachment dissociation of neutral and sialylated oligosaccharides

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Mass spectrometry of proton adducts of fucosylated N-glycans: fucose transfer between antennae gives rise to misleading fragments

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Collision-induced fragmentation of negative ions from N-linked glycans derivatized with 2-aminobenzoic acid

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Cα-C backbone fragmentation dominates in electron detachment dissociation of gas-phase polypeptide polyanions

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Fragmentation of oligosaccharide ions with 157 nm vacuum ultraviolet light

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Conformation of glycosaminoglycans by ion mobility mass spectrometry and molecular modelling

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Applications of a travelling wave-based radio-frequencyonly stacked ring ion guide

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Fragmentation of N-linked glycans with a matrix-assisted laser desorption/ionization ion trap time-of-flight mass spectrometer

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Recent advances in the structural biology of chondroitin sulfate and dermatan sulfate

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2003 Claude S. Hudson Award address in carbohydrate chemistry. Heparin: Structure and activity

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Rapid and sensitive differentiation of anomers, linkage, and position isomers of disaccharides using High-Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS)

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Enzymatic synthesis of antithrombin III-binding heparan sulfate pentasaccharide

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Tandem mass spectrometric strategies for determination of sulfation positions and uronic acid epimerization in chondroitin sulfate oligosaccharides

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Roles of heparan-sulphate glycosaminoglycans in cancer

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Evidence for long-range glycosyl transfer reactions in the gas phase

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Structural analysis of oligosaccharides by atmospheric pressure matrix-assisted laser desorption/ionisation quadrupole ion trap mass spectrometry

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Sugars in the gas phase: the spectroscopy and structure of jet-cooled phenyl beta-D-glucopyranoside

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Mass-selected infrared photodissociation spectroscopy of V4O10+

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Extension of the in-gel release method for structural analysis of neutral and sialylated N-linked glycans to the analysis of sulfated glycans: Application to the glycans from bovine thyroid-stimulating hormone

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Ionization and collision-induced fragmentation of N-linked and related carbohydrates using divalent canons

DJ Harvey

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Electron detachment dissociation of peptide di-anions: an electron-hole recombination phenomenon

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CHEMICAL PHYSICS LETTERS (2001)

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A critical review of ion mobility spectrometry for the detection of explosives and explosive related compounds

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Glycosylation and the immune system

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A profile of fertilization in mammals

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Human milk oligosaccharides are minimally digested in vitro

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Negative ion mass spectrometry of sialylated carbohydrates:: Discrimination of N-acetylneuraminic acid linkages by MALDI-TOF and ESI-TOF mass spectrometry

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Gas-phase infrared photodissociation spectroscopy of cationic polyaromatic hydrocarbons

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Electrospray mass spectrometry and fragmentation of N-linked carbohydrates derivatized at the reducing terminus

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Review Biochemistry & Molecular Biology

Keratan sulfate: structure, biosynthesis, and function

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GLYCOBIOLOGY (2000)

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Electrospray mass spectrometry and collision-induced fragmentation of 2-aminobenzamide-labelled neutral N-linked glycans

DJ Harvey

ANALYST (2000)

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Internal glucose residue loss in protonated O-diglycosyl flavonoids upon low-energy collision-induced dissociation

YL Ma et al.

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