相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Probabilistic cell typing enables fine mapping of closely related cell types in situ
Xiaoyan Qian et al.
NATURE METHODS (2020)
SciPy 1.0: fundamental algorithms for scientific computing in Python
Pauli Virtanen et al.
NATURE METHODS (2020)
Whitening of odor representations by the wiring diagram of the olfactory bulb
Adrian A. Wanner et al.
NATURE NEUROSCIENCE (2020)
A genetic, genomic, and computational resource for exploring neural circuit function
Fred P. Davis et al.
ELIFE (2020)
A connectome and analysis of the adult Drosophila central brain
Louis K. Scheffer et al.
ELIFE (2020)
Chromatin arranges in chains of mesoscale domains with nanoscale functional topography independent of cohesin
Ezequiel Miron et al.
SCIENCE ADVANCES (2020)
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction
Jan Funke et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2019)
Taiji: System-level identification of key transcription factors reveals transcriptional waves in mouse embryonic development
Kai Zhang et al.
SCIENCE ADVANCES (2019)
Neuronal cell types in the annelid Platynereis dumerilii
Elizabeth A. Williams et al.
CURRENT OPINION IN NEUROBIOLOGY (2019)
Neuronal cell types in the fly: single-cell anatomy meets single-cell genomics
Alexander Shakeel Bates et al.
CURRENT OPINION IN NEUROBIOLOGY (2019)
ilastik: interactive machine learning for (bio) image analysis
Stuart Berg et al.
NATURE METHODS (2019)
A repeated molecular architecture across thalamic pathways
James W. Phillips et al.
NATURE NEUROSCIENCE (2019)
A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution
Jonathan S. Packer et al.
SCIENCE (2019)
From spiral cleavage to bilateral symmetry: the developmental cell lineage of the annelid brain
Pavel Vopalensky et al.
BMC BIOLOGY (2019)
Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior
Dong-Wook Kim et al.
CELL (2019)
High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing
Xiaoyin Chen et al.
CELL (2019)
An ancestral apical brain region contributes to the central complex under the control of foxQ2 in the beetle Tribolium
Bicheng He et al.
ELIFE (2019)
Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts
Constantin Pape et al.
FRONTIERS IN COMPUTER SCIENCE (2019)
Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq
A. SebePedros et al.
CELL (2018)
Whole-Body Single-Cell Sequencing Reveals Transcriptional Domains in the Annelid Larval Body
Kaia Achim et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
High-precision automated reconstruction of neurons with flood-filling networks
Michal Januszewski et al.
NATURE METHODS (2018)
Functional architecture of reward learning in mushroom body extrinsic neurons of larval Drosophila
Timo Saumweber et al.
NATURE COMMUNICATIONS (2018)
Accurate and fiducial-marker-free correction for three-dimensional chromatic shift in biological fluorescence microscopy
Atsushi Matsuda et al.
SCIENTIFIC REPORTS (2018)
Early metazoan cell type diversity and the evolution of multicellular gene regulation
Arnau Sebe-Pedros et al.
NATURE ECOLOGY & EVOLUTION (2018)
Molecular Architecture of the Mouse Nervous System
Amit Zeisel et al.
CELL (2018)
SBEMimage: Versatile Acquisition Control Software for Serial Block-Face Electron Microscopy
Benjamin Titze et al.
FRONTIERS IN NEURAL CIRCUITS (2018)
Shared and distinct transcriptomic cell types across neocortical areas
Bosiljka Tasic et al.
NATURE (2018)
Whole-head recording of chemosensory activity in the marine annelid Platynereis dumerilii
Thomas F. Chartier et al.
OPEN BIOLOGY (2018)
Neural circuitry of a polycystin-mediated hydrodynamic startle response for predator avoidance
Luis A. Bezares-Calderon et al.
ELIFE (2018)
Cholinergic/glutamatergic co-transmission in striatal cholinergic interneurons: new mechanisms regulating striatal computation
Ornela Kljakic et al.
JOURNAL OF NEUROCHEMISTRY (2017)
Multicut brings automated neurite segmenation closer to human performance
Thorsten Beier et al.
NATURE METHODS (2017)
Strategic and practical guidelines for successful structured illumination microscopy
Justin Demmerle et al.
NATURE PROTOCOLS (2017)
Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii
Hernando Martinez Vergara et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing
Ed Lein et al.
SCIENCE (2017)
Correlating Anatomy and Function with Gene Expression in Individual Neurons by Combining in Vivo Labeling, Patch Clamp, and Single Cell RNA-seq
Carsten K. Pfeffer et al.
FRONTIERS IN CELLULAR NEUROSCIENCE (2017)
Ciliomotor circuitry underlying whole-body coordination of ciliary activity in the Platynereis larva
Csaba Veraszto et al.
ELIFE (2017)
Synaptic and peptidergic connectome of a neurosecretory center in the annelid brain
Elizabeth A. Williams et al.
ELIFE (2017)
Genealogical correspondence of a forebrain centre implies an executive brain in the protostome - deuterostome bilaterian ancestor
Gabriella H. Wolff et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2016)
Volume scanning electron microscopy for imaging biological ultrastructure
Benjamin Titze et al.
BIOLOGY OF THE CELL (2016)
Developmental interneuron subtype deficits after targeted loss of Arx
Eric D. Marsh et al.
BMC NEUROSCIENCE (2016)
Revisiting Neuronal Cell Type Classification in Caenorhabditis elegans
Oliver Hobert et al.
CURRENT BIOLOGY (2016)
Nematode nervous systems
William Schafer
CURRENT BIOLOGY (2016)
Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb
Adrian A. Wanner et al.
NATURE NEUROSCIENCE (2016)
The origin and evolution of cell types
Detlev Arendt et al.
NATURE REVIEWS GENETICS (2016)
3-dimensional electron microscopic imaging of the zebrafish olfactory bulb and dense reconstruction of neurons
Adrian A. Wanner et al.
SCIENTIFIC DATA (2016)
Saturated Reconstruction of a Volume of Neocortex
Narayanan Kasthuri et al.
CELL (2015)
A multilevel multimodal circuit enhances action selection in Drosophila
Tomoko Ohyama et al.
NATURE (2015)
BigDataViewer: visualization and processing for large image data sets
Tobias Pietzsch et al.
NATURE METHODS (2015)
SIMcheck: a Toolbox for Successful Super-resolution Structured Illumination Microscopy
Graeme Ball et al.
SCIENTIFIC REPORTS (2015)
Inter-individual stereotypy of the Platynereis larval visual connectome
Nadine Randel et al.
ELIFE (2015)
Illuminating the Base of the Annelid Tree Using Transcriptomics
Anne Weigert et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Neuronal connectome of a sensory-motor circuit for visual navigation
Nadine Randel et al.
ELIFE (2014)
scikit-image: image processing in Python
Stefan van der Walt et al.
PEERJ (2014)
System-wide Rewiring Underlies Behavioral Differences in Predatory and Bacterial-Feeding Nematodes
Daniel J. Bumbarger et al.
CELL (2013)
The bilaterian forebrain: an evolutionary chimaera
Maria Antonietta Tosches et al.
CURRENT OPINION IN NEUROBIOLOGY (2013)
Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system
Susan M. Sunkin et al.
NUCLEIC ACIDS RESEARCH (2013)
The Virtual Fly Brain browser and query interface
Nestor Milyaev et al.
BIOINFORMATICS (2012)
ImgLib2-generic image processing in Java
Tobias Pietzsch et al.
BIOINFORMATICS (2012)
Snakemake-a scalable bioinformatics workflow engine
Johannes Koester et al.
BIOINFORMATICS (2012)
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin et al.
NATURE METHODS (2012)
TrakEM2 Software for Neural Circuit Reconstruction
Albert Cardona et al.
PLOS ONE (2012)
A GAL4-Driver Line Resource for Drosophila Neurobiology
Arnim Jenett et al.
CELL REPORTS (2012)
Whole-body gene expression pattern registration in Platynereis larvae
Albina Asadulina et al.
EVODEVO (2012)
The NumPy Array: A Structure for Efficient Numerical Computation
Stefan van der Walt et al.
COMPUTING IN SCIENCE & ENGINEERING (2011)
A high-level 3D visualization API for Java and ImageJ
Benjamin Schmid et al.
BMC BIOINFORMATICS (2010)
Brain Homology: Dohrn of a New Era?
Nicholas James Strausfeld
BRAIN BEHAVIOR AND EVOLUTION (2010)
Profiling by Image Registration Reveals Common Origin of Annelid Mushroom Bodies and Vertebrate Pallium
Raju Tomer et al.
CELL (2010)
Three Consecutive Generations of Nephridia Occur During Development of Platynereis dumerilii (Annelida, Polychaeta)
Christian Hasse et al.
DEVELOPMENTAL DYNAMICS (2010)
Retinal Patterning by Pax6-Dependent Cell Adhesion Molecules
Elisabeth Rungger-Braendle et al.
DEVELOPMENTAL NEUROBIOLOGY (2010)
Comparative neuroanatomy suggests repeated reduction of neuroarchitectural complexity in Annelida
Carsten M. Heuer et al.
FRONTIERS IN ZOOLOGY (2010)
elastix: A Toolbox for Intensity-Based Medical Image Registration
Stefan Klein et al.
IEEE TRANSACTIONS ON MEDICAL IMAGING (2010)
Fast unfolding of communities in large networks
Vincent D. Blondel et al.
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT (2008)
Mechanism of phototaxis in marine zooplankton
Gaspar Jekely et al.
NATURE (2008)
Colour displays for categorical images
Chris Glasbey et al.
COLOR RESEARCH AND APPLICATION (2007)
Conserved sensory-neurosecretory cell types in annelid and fish forebrain: Insights into hypothalamus evolution
Kristin Tessmar-Raible et al.
CELL (2007)
Three-dimensional reconstruction of the nose epidermal cells in the microbial feeding nematode, Acrobeles complexus (Nematoda: Rhabditida)
Daniel J. Bumbarger et al.
JOURNAL OF MORPHOLOGY (2006)
Fluorescent two-color whole mount in situ hybridization in Platynereis dumerilii (Polychaeta, Annelida), an emerging marine molecular model for evolution and development
K Tessmar-Raible et al.
BIOTECHNIQUES (2005)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)