4.7 Article

On the design of lead-like DNA-encoded chemical libraries

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Chemistry, Multidisciplinary

Employing Photocatalysis for the Design and Preparation of DNA-encoded Libraries: A Case Study

Dominik K. Kolmel et al.

Summary: This Personal Account explores the authors' exploration of DNA-encoded libraries, focusing on the use of photocatalytic reactions and property-based computational analyses to select and validate building blocks for library construction. The resulting library consists of structurally diverse compounds within desirable property space, positioning it well to deliver novel chemical matter for drug discovery programs.

CHEMICAL RECORD (2021)

Article Chemistry, Medicinal

Trends in Hit-to-Lead Optimization Following DNA-Encoded Library Screens

Christopher A. Reiher et al.

Summary: DNA-encoded library (DEL) screens are a powerful tool for hit-finding in biological targets, and studies have shown that the molecular property changes post-DEL screening are similar to those in hit-to-lead optimization following high throughput screens. Unique aspects of DEL, such as combinatorial synthetic methods and linker effects at the DNA attachment point, impact the strategies and outcomes of hit-to-lead optimizations.

ACS MEDICINAL CHEMISTRY LETTERS (2021)

Article Chemistry, Organic

Functionalization of DNA-Tagged Alkenes Enabled by Visible-Light-Induced C-H Activation of N-Aryl Tertiary Amines

Rongfeng Wu et al.

Summary: A highly efficient method for constructing C(sp(3))-C(sp(3)) bonds via on-DNA photoredox catalysis has been developed, with conversions ranging from 55% to 95% and no obvious DNA damage observed. Various functional groups, including carboxylic acids, aldehydes, and aryl halides, were found to be tolerant of the C-H activation conditions, allowing for the creation of diverse library compounds.

ORGANIC LETTERS (2021)

Article Biochemical Research Methods

C-N Coupling of DNA-Conjugated (Hetero)aryl Bromides and Chlorides for DNA-Encoded Chemical Library Synthesis

Ying-Chu Chen et al.

BIOCONJUGATE CHEMISTRY (2020)

Article Biochemistry & Molecular Biology

Design and Construction of a Focused DNA-Encoded Library for Multivalent Chromatin Reader Proteins

Justin M. Rectenwald et al.

MOLECULES (2020)

Article Chemistry, Multidisciplinary

Selection of DNA-Encoded Dynamic Chemical Libraries for Direct Inhibitor Discovery

Yuqing Deng et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)

Review Chemistry, Organic

Reaction development for DNA-encoded library technology: From evolution to revolution?

Katharina Goette et al.

TETRAHEDRON LETTERS (2020)

Article Chemistry, Medicinal

Characterization of Specific N-α-Acetyltransferase 50 (Naa50) Inhibitors Identified Using a DNA Encoded Library

Pei-Pei Kung et al.

ACS MEDICINAL CHEMISTRY LETTERS (2020)

Article Chemistry, Medicinal

Identifying Oxacillinase-48 Carbapenemase Inhibitors Using DNA-Encoded Chemical Libraries

Doris Mia Taylor et al.

ACS INFECTIOUS DISEASES (2020)

Article Chemistry, Multidisciplinary

TEAD-YAP Interaction Inhibitors and MDM2 Binders from DNA-Encoded Indole-Focused Ugi Peptidomimetics

Verena B. K. Kunig et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)

Article Chemistry, Multidisciplinary

Navigating the DNA encoded libraries chemical space

Alfredo Martin et al.

COMMUNICATIONS CHEMISTRY (2020)

Article Chemistry, Multidisciplinary

A Focused DNA-Encoded Chemical Library for the Discovery of Inhibitors of NAD+-Dependent Enzymes

Lik Hang Yuen et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)

Article Chemistry, Organic

A Mild, DNA-Compatible Nitro Reduction Using B2(OH)4

Huang-Chi Du et al.

ORGANIC LETTERS (2019)

Article Chemistry, Multidisciplinary

A DNA-Encoded Chemical Library Incorporating Elements of Natural Macrocycles

Cedric J. Stress et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

Article Chemistry, Multidisciplinary

Functionality-Independent DNA Encoding of Complex Natural Products

Peixiang Ma et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2019)

Article Chemistry, Multidisciplinary

Expanding Reactivity in DNA-Encoded Library Synthesis via Reversible Binding of DNA to an Inert Quaternary Ammonium Support

Dillon T. Flood et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)

Article Biochemistry & Molecular Biology

Novel Nucleic Acid Binding Small Molecules Discovered Using DNA-Encoded Chemistry

Alexander Litovchick et al.

MOLECULES (2019)

Article Chemistry, Multidisciplinary

Micellar Bronsted Acid Mediated Synthesis of DNA-Tagged Heterocycles

M. Klika Skopic et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)

Article Chemistry, Multidisciplinary

DNA Barcoding a Complete Matrix of Stereoisomeric Small Molecules

Christopher J. Gerry et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)

Article Biochemical Research Methods

DNA-Encoded Combinatorial Library of Macrocyclic Peptoids

Min Hyeon Shin et al.

BIOCONJUGATE CHEMISTRY (2019)

Article Chemistry, Medicinal

Designing DNA Encoded Libraries of Diverse Products in a Focused Property Space

Hongyao Zhu et al.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2019)

Article Chemistry, Medicinal

Beyond the Rule of 5: Lessons Learned from AbbVie's Drugs and Compound Collection

David A. DeGoey et al.

JOURNAL OF MEDICINAL CHEMISTRY (2018)

Editorial Material Chemistry, Multidisciplinary

Making molecular monsters

Michelle Francl

NATURE CHEMISTRY (2018)

Article Chemistry, Multidisciplinary

Second-generation DNA-templated macrocycle libraries for the discovery of bioactive small molecules

Dmitry L. Usanov et al.

NATURE CHEMISTRY (2018)

Article Chemistry, Medicinal

What Do You Get from DNA-Encoded Libraries?

Alexander L. Satz

ACS MEDICINAL CHEMISTRY LETTERS (2018)

Article Chemistry, Applied

Development and Synthesis of DNA-Encoded Benzimidazole Library

Yun Ding et al.

ACS COMBINATORIAL SCIENCE (2018)

Article Chemistry, Multidisciplinary

DNA-Encoded Dynamic Chemical Library and Its Applications in Ligand Discovery

Yu Zhou et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2018)

Article Biochemistry & Molecular Biology

Design and Application of a DNA-Encoded Macrocyclic Peptide Library

Zhengrong Zhu et al.

ACS CHEMICAL BIOLOGY (2018)

Review Biotechnology & Applied Microbiology

DNA-encoded chemistry: enabling the deeper sampling of chemical space

Robert A. Goodnow et al.

NATURE REVIEWS DRUG DISCOVERY (2017)

Article Biochemistry & Molecular Biology

On-DNA Pd and Cu promoted C-N cross-coupling reactions

Xiaojie Lu et al.

MEDCHEMCOMM (2017)

Article Biochemistry & Molecular Biology

Isoform-Selective ATAD2 Chemical Probe with Novel Chemical Structure and Unusual Mode of Action

Amaury E. Fernandez-Montalvan et al.

ACS CHEMICAL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Zirconium(IV)-Catalyzed Ring Opening of on-DNA Epoxides in Water

Lijun Fan et al.

CHEMBIOCHEM (2017)

Article Biochemistry & Molecular Biology

Novel p38 alpha MAP kinase inhibitors identified from yoctoReactor DNA-encoded small molecule library

L. K. Petersen et al.

MEDCHEMCOMM (2016)

Article Biochemistry & Molecular Biology

Design and synthesis of DNA-encoded libraries based on a benzodiazepine and a pyrazolopyrimidine scaffold

M. Klika Skopic et al.

MEDCHEMCOMM (2016)

Article Chemistry, Medicinal

Discovery and Optimization of Potent, Selective, and in Vivo Efficacious 2-Aryl Benzimidazole BCATm Inhibitors

Hongfeng Deng et al.

ACS MEDICINAL CHEMISTRY LETTERS (2016)

Article Chemistry, Applied

What is a DNA-Compatible Reaction?

Marie L. Malone et al.

ACS COMBINATORIAL SCIENCE (2016)

Article Chemistry, Multidisciplinary

Identification of Structure-Activity Relationships from Screening a Structurally Compact DNA-Encoded Chemical Library

Raphael M. Franzini et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2015)

Article Chemistry, Medicinal

Discovery of a Potent Class of PI3Kα Inhibitors with Unique Binding Mode via Encoded Library Technology (ELT)

Hongfang Yang et al.

ACS MEDICINAL CHEMISTRY LETTERS (2015)

Article Chemistry, Medicinal

Discovery of Potent and Selective Inhibitors for ADAMTS-4 through DNA-Encoded Library Technology (ELT)

Yun Ding et al.

ACS MEDICINAL CHEMISTRY LETTERS (2015)

Article Chemistry, Medicinal

Discovery, SAR, and X-ray Binding Mode Study of BCATm Inhibitors from a Novel DNA-Encoded Library

Hongfeng Deng et al.

ACS MEDICINAL CHEMISTRY LETTERS (2015)

Article Chemistry, Multidisciplinary

A DNA-templated synthesis of encoded small molecules by DNA self-assembly

Cheng Cao et al.

CHEMICAL COMMUNICATIONS (2014)

Review Biochemistry & Molecular Biology

Oral Druggable Space beyond the Rule of 5: Insights from Drugs and Clinical Candidates

Bradley Croy Doak et al.

CHEMISTRY & BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Estimation of the size of drug-like chemical space based on GDB-17 data

P. G. Polishchuk et al.

JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN (2013)

Article Chemistry, Multidisciplinary

Discovery of Small-Molecule Interleukin-2 Inhibitors from a DNA-Encoded Chemical Library

Markus Leimbacher et al.

CHEMISTRY-A EUROPEAN JOURNAL (2012)

Article Biochemistry & Molecular Biology

Selection of Carbonic Anhydrase IX Inhibitors from One Million DNA-Encoded Compounds

Fabian Buller et al.

ACS CHEMICAL BIOLOGY (2011)

Review Pharmacology & Pharmacy

Principles of early drug discovery

J. P. Hughes et al.

BRITISH JOURNAL OF PHARMACOLOGY (2011)

Review Biochemistry & Molecular Biology

Molecular complexity and fragment-based drug discovery: ten years on

Andrew R. Leach et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2011)

Article Chemistry, Medicinal

The Medicinal Chemist's Toolbox: An Analysis of Reactions Used in the Pursuit of Drug Candidates

Stephen D. Roughley et al.

JOURNAL OF MEDICINAL CHEMISTRY (2011)

Article Biochemical Research Methods

Isolation of Potent and Specific Trypsin Inhibitors from a DNA-Encoded Chemical Library

Luca Mannocci et al.

BIOCONJUGATE CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Discovery of TNF Inhibitors from a DNA-Encoded Chemical Library based on Diels-Alder Cycloaddition

Fabian Buller et al.

CHEMISTRY & BIOLOGY (2009)

Article Chemistry, Multidisciplinary

A Yoctoliter-Scale DNA Reactor for Small-Molecule Evolution

Margit Haahr Hansen et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)

Article Biochemistry & Molecular Biology

Design, synthesis and selection of DNA-encoded small-molecule libraries

Matthew A. Clark et al.

NATURE CHEMICAL BIOLOGY (2009)

Article Chemistry, Medicinal

Design and synthesis of a novel DNA-encoded chemical library using Diels-Alder cycloadditions

Fabian Buller et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2008)

Article Chemistry, Multidisciplinary

Translation of DNA into a Library of 13 000 Synthetic Small-Molecule Macrocycles Suitable for in Vitro Selection

Brian N. Tse et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Multidisciplinary Sciences

High-throughput sequencing allows the identification of binding molecules isolated from DNA-encoded chemical libraries

Luca Mannocci et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Chemistry, Multidisciplinary

Synthetic ligands discovered by in vitro selection

S. Jarrett Wrenn et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Multidisciplinary Sciences

DNA-templated organic synthesis and selection of a library of macrocycles

ZJ Gartner et al.

SCIENCE (2004)

Article Biotechnology & Applied Microbiology

Encoded self-assembling chemical libraries

S Melkko et al.

NATURE BIOTECHNOLOGY (2004)

Article Chemistry, Multidisciplinary

Molecular complexity and its impact on the probability of finding leads for drug discovery

MM Hann et al.

JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES (2001)

Review Pharmacology & Pharmacy

Diversity screening versus focussed screening in drug discovery

MJ Valler et al.

DRUG DISCOVERY TODAY (2000)