4.7 Article

FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Extending the small-molecule similarity principle to all levels of biology with the Chemical Checker

Miquel Duran-Frigola et al.

NATURE BIOTECHNOLOGY (2020)

Review Pharmacology & Pharmacy

A new wave of innovation in Semantic web tools for drug discovery

Samantha Kanza et al.

EXPERT OPINION ON DRUG DISCOVERY (2019)

Article Multidisciplinary Sciences

Drug prioritization using the semantic properties of a knowledge graph

Tareq B. Malas et al.

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

Huaiyu Mi et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

PubChem 2019 update: improved access to chemical data

Sunghwan Kim et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

Denise N. Slenter et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Clinical Neurology

Why a P-Value is Not Enough

Federico Solla et al.

CLINICAL SPINE SURGERY (2018)

Article Biochemistry & Molecular Biology

Open Targets: a platform for therapeutic target identification and validation

Gautier Koscielny et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Biochemistry & Molecular Biology

Mass spectrometry for the discovery of biomarkers of sepsis

Katelyn R. Ludwig et al.

MOLECULAR BIOSYSTEMS (2017)

Article Biochemistry & Molecular Biology

LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes

Andres Canada et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks

Sebastien Moretti et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

ChEBI in 2016: Improved services and an expanding collection of metabolites

Janna Hastings et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Cell Biology

Metabolomics: beyond biomarkers and towards mechanisms

Caroline H. Johnson et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2016)

Article Mathematical & Computational Biology

Extraction of chemical-induced diseases using prior knowledge and textual information

Ewoud Pons et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)

Article Chemistry, Multidisciplinary

Literature information in PubChem: associations between PubChem records and scientific articles

Sunghwan Kim et al.

JOURNAL OF CHEMINFORMATICS (2016)

Article Chemistry, Multidisciplinary

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy

Yannick Djoumbou Feunang et al.

JOURNAL OF CHEMINFORMATICS (2016)

Review Biochemistry & Molecular Biology

Computational approaches in target identification and drug discovery

Theodora Katsila et al.

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2016)

Article Mathematical & Computational Biology

Two Similarity Metrics for Medical Subject Headings (MeSH): An Aid to Biomedical Text Mining and Author Name Disambiguation

Neil R. Smalheiser et al.

JOURNAL OF BIOMEDICAL DISCOVERY AND COLLABORATION (2016)

Article Biochemical Research Methods

The role of ontologies in biological and biomedical research: a functional perspective

Robert Hoehndorf et al.

BRIEFINGS IN BIOINFORMATICS (2015)

Article Chemistry, Multidisciplinary

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases

Gang Fu et al.

JOURNAL OF CHEMINFORMATICS (2015)

Article Biochemical Research Methods

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

Franck Giacomoni et al.

BIOINFORMATICS (2015)

Review Pathology

Molecular genetics and diagnosis of phenylketonuria: state of the art

Nenad Blau et al.

EXPERT REVIEW OF MOLECULAR DIAGNOSTICS (2014)

Article Biochemistry & Molecular Biology

The ChEMBL bioactivity database: an update

A. Patricia Bento et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Alkemio: association of chemicals with biomedical topics by text and data mining

Jose A. Gijon-Correas et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Biology

Semantic Web technologies for the big data in life sciences

Hongyan Wu et al.

BIOSCIENCE TRENDS (2014)

Article Multidisciplinary Sciences

Human symptoms-disease network

XueZhong Zhou et al.

NATURE COMMUNICATIONS (2014)

Article Mathematical & Computational Biology

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

Michel Dumontier et al.

JOURNAL OF BIOMEDICAL SEMANTICS (2014)

Article Chemistry, Multidisciplinary

The ChEMBL database as linked open data

Egon L. Willighagen et al.

JOURNAL OF CHEMINFORMATICS (2013)

Article Chemistry, Multidisciplinary

UniChem: a unified chemical structure cross-referencing and identifier tracking system

Jon Chambers et al.

JOURNAL OF CHEMINFORMATICS (2013)

Article Biochemical Research Methods

Metab2MeSH: annotating compounds with medical subject headings

Maureen A. Sartor et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs)

Warren A. Cheung et al.

BMC BIOINFORMATICS (2012)

Review Pharmacology & Pharmacy

Open PHACTS: semantic interoperability for drug discovery

Antony J. Williams et al.

DRUG DISCOVERY TODAY (2012)

Article Computer Science, Artificial Intelligence

FaBiO and CiTO: Ontologies for describing bibliographic resources and citations

Silvio Peroni et al.

JOURNAL OF WEB SEMANTICS (2012)

Review Genetics & Heredity

Text-mining solutions for biomedical research: enabling integrative biology

Dietrich Rebholz-Schuhmann et al.

NATURE REVIEWS GENETICS (2012)

Article Biochemistry & Molecular Biology

PubChem's BioAssay Database

Yanli Wang et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

Martijn P. van Iersel et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data

Jianguo Xia et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Psychiatry

A Case Study of Salami Slicing: Pooled Analyses of Duloxetine for Depression

Glen I. Spielmans et al.

PSYCHOTHERAPY AND PSYCHOSOMATICS (2010)

Review Biochemistry & Molecular Biology

Computational toxicology: an overview of the sources of data and of modelling methods

Florian Nigsch et al.

EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2009)

Article Computer Science, Information Systems

Evaluation of query expansion using MeSH in PubMed

Zhiyong Lu et al.

INFORMATION RETRIEVAL (2009)

Editorial Material Multidisciplinary Sciences

A tale of two citations

Mounir Errami et al.

NATURE (2008)

Article Biochemical Research Methods

How to decide which are the most pertinent overly-represented features during gene set enrichment analysis

Roland Barriot et al.

BMC BIOINFORMATICS (2007)

Article Biochemical Research Methods

Knowledge networks in the age of the Semantic Web

Eric Neumann et al.

BRIEFINGS IN BIOINFORMATICS (2007)

Article Zoology

The Comparative Toxicogenomics Database (CTD): A resource for comparative toxicological studies

C. J. Mattingly et al.

JOURNAL OF EXPERIMENTAL ZOOLOGY PART A-ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY (2006)

Article Biochemistry & Molecular Biology

DrugBank: a comprehensive resource for in silico drug discovery and exploration

David S. Wishart et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Agriculture, Multidisciplinary

A Practical Comparison Between Thesaurus and Ontology Techniques As a Basis for Search Improvement

Soonho Kim et al.

JOURNAL OF AGRICULTURAL & FOOD INFORMATION (2006)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)