相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Brian P. Alcock et al.
NUCLEIC ACIDS RESEARCH (2020)
PRAP: Pan Resistome analysis pipeline
Yichen He et al.
BMC BIOINFORMATICS (2020)
The pan-genome of Treponema pallidum reveals differences in genome plasticity between subspecies related to venereal and non-venereal syphilis
Arun Kumar Jaiswal et al.
BMC GENOMICS (2020)
Acinetobacter baumannii Efflux Pumps and Antibiotic Resistance
Seyyed Naser Abdi et al.
INFECTION AND DRUG RESISTANCE (2020)
Insights into Acinetobacter baumannii: A Review of Microbiological, Virulence, and Resistance Traits in a Threatening Nosocomial Pathogen
Carole Ayoub Moubareck et al.
ANTIBIOTICS-BASEL (2020)
Can Insertion Sequences Proliferation Influence Genomic Plasticity? Comparative Analysis of Acinetobacter baumannii Sequence Type 78, a Persistent Clone in Italian Hospitals
Stefano Gaiarsa et al.
FRONTIERS IN MICROBIOLOGY (2019)
Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclusive genes for biofilm formation
Eugenio L. Mangas et al.
MICROBIAL GENOMICS (2019)
The Pseudomonas aeruginosa Pan-Genome Provides New Insights on Its Population Structure, Horizontal Gene Transfer, and Pathogenicity
Luca Freschi et al.
GENOME BIOLOGY AND EVOLUTION (2019)
Pangenomic Approach To Understanding Microbial Adaptations within a Model Built Environment, the International Space Station, Relative to Human Hosts and Soil
Ryan A. Blaustein et al.
MSYSTEMS (2019)
OrthoFinder: phylogenetic orthology inference for comparative genomics
David M. Emms et al.
GENOME BIOLOGY (2019)
Molecular characterization & epidemiology of carbapenem-resistant Acinetobacter baumannii collected across India
Saranya Vijayakumar et al.
INDIAN JOURNAL OF MEDICAL RESEARCH (2019)
New sequence types of Acinetobacter baumannii in two emergency hospitals in the Central-West region of Brazil
Francisco Kennedy Scofoni Faleiros de Azevedo et al.
REVISTA DA SOCIEDADE BRASILEIRA DE MEDICINA TROPICAL (2019)
Colistin resistance in Acinetobacter baumannii isolated from critically ill patients: clinical characteristics, antimicrobial susceptibility and outcome
Bukhari Elham et al.
AFRICAN HEALTH SCIENCES (2019)
Pan-genomic approach shows insight of genetic divergence and pathogenic-adaptation of Pasteurella multocida
Raquel Hurtado et al.
GENE (2018)
Comparative transcriptomics of multidrug-resistant Acinetobacter baumannii in response to antibiotic treatments
Hao Qin et al.
SCIENTIFIC REPORTS (2018)
Quantifying the Evolutionary Conservation of Genes Encoding Multidrug Efflux Pumps in the ESKAPE Pathogens To Identify Antimicrobial Drug Targets
Lauren E. Brooks et al.
MSYSTEMS (2018)
Antibiotics, Resistome and Resistance Mechanisms: A Bacterial Perspective
Insha Sultan et al.
FRONTIERS IN MICROBIOLOGY (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
Identification of antibiotic resistance genes in the multidrug-resistant Acinetobacter baumannii strain, MDR-SHH02, using whole-genome sequencing
Hualiang Wang et al.
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE (2017)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology
Zhaohui Ni et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2017)
Cellular adaptation to xenobiotics: Interplay between xenosensors, reactive oxygen species and FOXO transcription factors
Lars-Oliver Klotz et al.
REDOX BIOLOGY (2017)
Multiyear, Multinational Survey of the Incidence and Global Distribution of Metallo-β-Lactamase-Producing Enterobacteriaceae and Pseudomonas aeruginosa
Krystyna M. Kazmierczak et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2016)
Acinetobacter baumannii: biology and drug resistance - role of carbapenemases
Pawel Nowak et al.
FOLIA HISTOCHEMICA ET CYTOBIOLOGICA (2016)
Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets
Afreenish Hassan et al.
BMC GENOMICS (2016)
Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools
Luciano Takeshi Kishi et al.
BMC MICROBIOLOGY (2016)
Review of the taxonomy of the genus Arthrobacter, emendation of the genus Arthrobacter sensu lato, proposal to reclassify selected species of the genus Arthrobacter in the novel genera Glutamicibacter gen. nov., Paeniglutamicibacter gen. nov., Pseudoglutamicibacter gen. nov., Paenarthrobacter gen. nov and Pseudarthrobacter gen. nov., and emended description of Arthrobacter roseus
Hans-Juergen Busse
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
GIPSy: Genomic island prediction software
Siomar C. Soares et al.
JOURNAL OF BIOTECHNOLOGY (2016)
Molecular epidemiology of carbapenem-resistant Acinetobacter baumannii in South America
Carlos Hernan Rodriguez et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering
Mehul Jani et al.
FRONTIERS IN MICROBIOLOGY (2016)
Inside the Pan-genome - Methods and Software Overview
Luis Carlos Guimaraes et al.
CURRENT GENOMICS (2015)
Microbial Speciation
B. Jesse Shapiro et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2015)
Detection of AmpC β-lactamases in Acinetobacter baumannii in the Xuzhou region and analysis of drug resistance
Yongrui Liu et al.
EXPERIMENTAL AND THERAPEUTIC MEDICINE (2015)
Phylogeography of Yersinia ruckeri reveals effects of past evolutionary events on the current strain distribution and explains variations in the global transmission of enteric redmouth (ERM) disease
Asmine Bastardo et al.
FRONTIERS IN MICROBIOLOGY (2015)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor
Leticia M. S. Lery et al.
BMC BIOLOGY (2014)
Molecular Epidemiology of Carbapenem Non-Susceptible Acinetobacter baumannii in France
Katy Jeannot et al.
PLOS ONE (2014)
Acinetobacter baumannii: evolution of a global pathogen
Luisa C. S. Antunes et al.
PATHOGENS AND DISEASE (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Evolution of a Pathogen: A Comparative Genomics Analysis Identifies a Genetic Pathway to Pathogenesis in Acinetobacter
Jason W. Sahl et al.
PLOS ONE (2013)
The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains
Siomar C. Soares et al.
PLOS ONE (2013)
The Success of Acinetobacter Species; Genetic, Metabolic and Virulence Attributes
Anton Y. Peleg et al.
PLOS ONE (2012)
Acinetobacter baumannii An emerging opportunistic pathogen
Aoife Howard et al.
VIRULENCE (2012)
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
Nabil-Fareed Alikhan et al.
BMC GENOMICS (2011)
The Genomics of Acinetobacter baumannii: Insights into Genome Plasticity, Antimicrobial Resistance and Pathogenicity
Francesco Imperi et al.
IUBMB LIFE (2011)
Horizontal Gene Transfer and Assortative Recombination within the Acinetobacter baumannii Clinical Population Provide Genetic Diversity at the Single carO Gene, Encoding a Major Outer Membrane Protein Channel
Maria Alejandra Mussi et al.
JOURNAL OF BACTERIOLOGY (2011)
The Ecology, Biology and Pathogenesis of Acinetobacter spp.: An Overview
Hamuel James Doughari et al.
MICROBES AND ENVIRONMENTS (2011)
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Keith A. Jolley et al.
BMC BIOINFORMATICS (2010)
Legionella pneumophila pangenome reveals strain-specific virulence factors
Giuseppe D'Auria et al.
BMC GENOMICS (2010)
Xenobiotic Metabolism: A View through the Metabolometer
Andrew D. Patterson et al.
CHEMICAL RESEARCH IN TOXICOLOGY (2010)
Notes on the characterization of prokaryote strains for taxonomic purposes
B. J. Tindall et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)
The Population Structure of Acinetobacter baumannii: Expanding Multiresistant Clones from an Ancestral Susceptible Genetic Pool
Laure Diancourt et al.
PLOS ONE (2010)
Acinetobacter baumannii:: Emergence of a successful pathogen
Anton Y. Peleg et al.
CLINICAL MICROBIOLOGY REVIEWS (2008)
Evolutionary patterns in prokaryotic genomes
Eduardo P. C. Rocha
CURRENT OPINION IN MICROBIOLOGY (2008)
Comparative Genome Sequence Analysis of Multidrug-Resistant Acinetobacter baumannii
Mark D. Adams et al.
JOURNAL OF BACTERIOLOGY (2008)
Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles
David Vallenet et al.
PLOS ONE (2008)
RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
NUCLEIC ACIDS RESEARCH (2007)
Horizontal gene transfer in a polyclonal outbreak of carbapenem-resistant Acinetobacter baumannii
Jubelle K. Valenzuela et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2007)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2007)
Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera
Torben Martens et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)
The microbial pan-genome
D Medini et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome
H Tettelin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree
SR Gadagkar et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2005)
Efflux-mediated drug resistance in bacteria
XZ Li et al.
DRUGS (2004)
AmpC cephalosporinase hyperproduction in Acinetobacter baumannii clinical strains
S Corvec et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2003)