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Arne M. Taxt et al.
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VFDB 2019: a comparative pathogenomic platform with an interactive web interface
Bo Liu et al.
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Luke W. Anson et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2018)
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Virginie Sauvagel et al.
PLOS ONE (2018)
Acquisition of virulence genes by a carrier strain gave rise to the ongoing epidemics of meningococcal disease in West Africa
Ola Bronstad Brynildsrud et al.
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Sae Ashikawa et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2018)
Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis
Jun Cheng et al.
ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS (2018)
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K. Schmidt et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2017)
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
Baofeng Jia et al.
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Superiority of SDS lysis over saponin lysis for direct bacterial identification from positive blood culture bottle by MALDI-TOF MS
Yvan Caspar et al.
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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
Sergey Koren et al.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
An Improved In-house MALDI-TOF MS Protocol for Direct Cost-Effective Identification of Pathogens from Blood Cultures
Menglan Zhou et al.
FRONTIERS IN MICROBIOLOGY (2017)
The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee
M. J. Ellington et al.
CLINICAL MICROBIOLOGY AND INFECTION (2017)
The Genetics of Enteropathogenic Escherichia coli Virulence
Jaclyn S. Pearson et al.
ANNUAL REVIEW OF GENETICS, VOL 50 (2016)
Real-time, portable genome sequencing for Ebola surveillance
Joshua Quick et al.
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Next-generation sequencing diagnostics of bacteremia in septic patients
Silke Grumaz et al.
GENOME MEDICINE (2016)
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION™ sequencing
Minh Duc Cao et al.
GIGASCIENCE (2016)
Oxford Nanopore MinION Sequencing and Genome Assembly
Hengyun Lu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2016)
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N. Willemse et al.
SCIENTIFIC REPORTS (2016)
Blood culture-based diagnosis of bacteraemia: state of the art
O. Opota et al.
CLINICAL MICROBIOLOGY AND INFECTION (2015)
Rapid molecular diagnostic tests in patients with bacteremia: evaluation of their impact on decision making and clinical outcomes
K. Z. Vardakas et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2015)
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Alexander L. Greninger et al.
GENOME MEDICINE (2015)
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Philip M. Ashton et al.
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Jesus Gonzalo-Asensio et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Commercial Multiplex Technologies for the Microbiological Diagnosis of Sepsis
Evan E. Lebovitz et al.
MOLECULAR DIAGNOSIS & THERAPY (2013)
Severe Sepsis and Septic Shock REPLY
Derek C. Angus et al.
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Quality of blood culture testing - a survey in intensive care units and microbiological laboratories across four European countries
Roland P. H. Schmitz et al.
CRITICAL CARE (2013)
Severe Sepsis and Septic Shock
Derek C. Angus et al.
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Performance comparison of benchtop high-throughput sequencing platforms
Nicholas J. Loman et al.
NATURE BIOTECHNOLOGY (2012)
Epidemic Profile of Shiga-Toxin-Producing Escherichia coli O104:H4 Outbreak in Germany
Christina Frank et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Epidemiology of sepsis in Germany: results from a national prospective multicenter study
Christoph Engel et al.
INTENSIVE CARE MEDICINE (2007)
Staphylococcus aureus bacteremia -: Recurrence and the impact of antibiotic treatment in a prospective multicenter study
FY Chang et al.
MEDICINE (2003)
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